Table 4.
Loci and nucleotide coverage between algorithms
| B | ||||||
| Sputnik {1,-6,7} | TRF {2,7,7;20} | Mreps | STAR | RepeatMasker | ||
| A | Sputnik {1,-6,7} | - | 34.94 (58.81) | 20.4 (47.9) | 9.51 (39.02) | 7.37 (36.98) |
| TRF {2,7,7;20} | 85.61 (72.82) | - | 45.3 (54.72) | 17.26 (32.69) | 12.6 (27.08) | |
| Mreps | 82.63 (59.82) | 80.85 (67.73) | - | 33.34 (39.03) | 24.63 (32.37) | |
| STAR | 95.29 (69.56) | 93.92 (80.03) | 93.61 (77.31) | - | 57.98 (66.83) | |
| RepeatMasker | 100 (66.39) | 97.89 (75.43) | 97.64 (73) | 82.13 (76.2) | - | |
Proportion of the total number of detections (perfect and imperfect) of algorithm A also detected (i.e., covered) by algorithm B in the human X chromosome. The value in brackets is the proportion of nucleotides detected by A and covered by B.