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. 2007 May 4;6:9. doi: 10.1186/1477-3163-6-9

Table 1.

Primers used in the study.

Primer designation Primer sequence Location Type of analysis Ann. t, C° MgCl2, mM Product size, bp
MSe1-F tgctccaggctcttctcaggc BIN1 promoter CGI, see Fig. 1 MSe PCR 61 1.5 255
MSe1-R ggagaacgaaagtggagaagc
MSe2-F ggggctccgggcgcgttctcc 69 1.0 606
MSe2-R actgcccatctctgccatcgc
MSp1-F gggaaaggaaatttaatttttttt MSp sequencing 59 1.0 218
MSp1-R aataataaccctcaactctccaaac
MSp2-F ggataataagttgttttttaaagggttatt 58 1.0 212
MSp2-R ctccacctaatctcctttcctaaat
BIN1-CA1F cccgattttcattcaggtgtt BIN1 intron 5 LOH 60 1.5 ~210
BIN1-CA1R agttccgagtttgatgccagc
BIN1-CA2F cttctacaccttccacaatca 3 kb distal to BIN1 60 1.5 ~130
BIN1-CA2R attcctttcctgtccctttgg
BIN1-tccF ccccaccccacaacctgaagt BIN1 intron 1 60 1.5 ~200
BIN1-tccR tccctgtgtttcctggctaag