Table 2.
PCR-RFLP-based CYP2J2 genotyping assays
Allele | Enzyme | PCR in bp | Digest ºC | wild-type pattern in bp | variant pattern in bp |
---|---|---|---|---|---|
*2 | Hpy188I | 669 | 37 | 350+108+102+84+18+7 | 434+108+102+18+7 |
*3 | NsiI | 307 | 37 | 280 + 27 | 141 + 139 + 27 |
*4 | Tsp509I | 669 | 65 | 379 + 290 | 379 + 253 + 37 |
*5 | MseI | 244 | 37 | 214 + 30 | 174 + 40+ 30 |
*6 | Tsp509I | 240 | 65 | 157 + 83 | 240 |
*7 | AluI | 355 | 37 | 301 + 54 | 165 + 136 + 54 |
*10 | ApaI | 230 | 25 | 202 + 28 | 230 |
Primer sequences and other PCR details are given in Table 1. Each reaction contained 2.5U restriction enzyme and the appropriate accompanying restriction buffer that was diluted 20-fold to a final concentration 0.5x. Digestion reactions were incubated >6 hrs or overnight to ensure completeness.