Table 2.
Blast Cluster/Read Name | MAGI4.0 hit | Insertion site | ZMGI hit | Insertion type | Annotation/Expression Pattern | Likely cause for failure to amplify |
03S-0467-13A2-G01 | repeat hit only | DR906457 | exon | egg cell expressed | primer design error | |
bc0041 | MAGI4_104 | 252 | no hit | No EST support for gene | primer design error | |
bc0093 | MAGI4_65387 | 128 | DN229926 | exon | leaf & SAM expressed | unknown |
bc0182 | MAGI4_121677 | no MuTIR | no hit | No EST support for gene | primer design error | |
bc1042 | MAGI4_128194 | 1502 | no hit | No EST support for gene | primer design error | |
bc1073 | MAGI4_94877 | 3164 | TC303220 | exon | TM20/Dek34 gene | low quality sequence |
bc1382 | repeat hit only | no MuTIR | no hit | Novel maize genomic sequence | low quality sequence | |
bc1435 | MAGI4_132661 | no MuTIR | DT943333 | unknown | thioesterase superfamily | low quality sequence |
bc1509 | repeat hit only | no hit | Novel maize genomic sequence | primer design error | ||
bc1526 | MAGI4_13062 | no MuTIR | TC292893 | unknown | 26S protease regulatory subunit 7 | unknown |
bc1537 | MAGI4_5849 | 481 | TC291433 | intron | cold stressed seedling expression | low quality sequence |
bc1571 | MAGI4_154704 | 734 | TC282381 | -40bp | short-chain dehydrogenase/reductase | unknown |