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Proportion of common SNPs in Phase I captured by sets of tag SNPs
| Common SNPs captured (%)
|
|||
|---|---|---|---|
| Tag SNP set size | YRI | CEU | CHB +JPT |
| 10,000 | 12.3 | 20.4 | 21.9 |
| 20,000 | 19.1 | 30.9 | 33.2 |
| 50,000 | 32.7 | 50.4 | 53.6 |
| 100,000 | 47.2 | 68.5 | 72.2 |
| 250,000 | 70.1 | 94.1 | 98.5 |
As in Table 7, tag SNPs were picked to capture common SNPs in HapMap release 16c1 using Haploview, selecting SNPs in order of the fraction of sites captured. Common SNPs were captured by fixed-size sets of pairwise tags at r2 ≥ 0.8.
