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. 2007 May 9;8:113. doi: 10.1186/1471-2164-8-113

Table 3.

Sample feature table for 91 NTs

NT Ida GenBank accessionb length (bp) ORF_length aac speciesd No. exons poly A signale motiff tissue preference Hg17 locus BTAU_2.0 assignment Cattle genome contextg Segmental locationh
BTC1_14FL (XM_873204) CK394134 868 63 4 AATAAA CpG muscle 7p13 chr4:43, 188,679–43,191, 770 intergenic interstitial
BTC1_15FL AY563860 630 none C 1 AATAAA ncRNA none 14q11.2 scaffold3389:59,086–59,711 inter genie interstitial
BTC1_33FL CK394175 691 35 C 5 ATTAAA CpG none 6q14.3 scaffold4626:20,602–22,398 intergenic interstitial
BTC1_34FL CK394179 977 100 K A 3 AATAAA ADH_DRE, GY-Box, signalP placentome 9q32 scaffold9964:10,570–17,798 intergenic interstitial
BTC1_53FL AY563751 525 106 C 1 AATAAA none none 19q13.31 chr6:49, 142,506–49,143,026 intergenic interstitial
BTC1_55FL AY563756 777 82 K A 2 AATAGA signalP none 16q22.1 chr18:13,861,852–13,862,619 intergenic boundary
BTC1_57FL AY563869 911 none C 1 AATAAA none thymus 7p22.1 chr25:33,360,786–33,361,318 ZnF447 interstitial
BTC1_58FL AY563762 1544 64 A 2 ATTAAA ADH_DRE, GY-Box none 11q12.2 chr29:31,601,481–31,607,081 RAB3 interstitial
BTC1_71FL AY563803 691 none C 1 AATAAA none 3p21.31 chr22:42,680,522–42,681,188 SACMIL interstitial
BTC1_77FL AY563824 1095 84 C 1 AATAAA GY-Box; CpG thymus 18q21.33 chr24:44,739,526–44,740,613 HDGFRP2 subtelomeric
BTC1_78FL CK394028 1736 91 K A 1 AATAAA GY-Box; IR mesenteric lymphnode, thymus 1p36.13 chr2:85,996,428–85,997,304 intergenic subtelomeric
BTC1_79FL AY563826 732 none C 4 TATAAA CpG; ncRNA cerebrum 2p11.2 chr11:34,570,339–34,575,174 intergenic interstitial
BTC1_92FL (XM_587188) CK394038 933 93 K; 127 C 1 TGTAAA none cerebrum 17q25.1 chr19:49,709,796–49,710,719 intergenic interstitial
BTC1_93FL AY563890 1269 147 K C 1 AATAAA GY-Box thymus 22q12.2 chr17:42,667,501–42,668,530 SEC14L4 interstitial
BTC1_95FL AY563713 2492 108 C 1 AATAAA none skin 6p21.2 chr23:8,629,884–8,632,373 intergenic interstitial
BTC1_102FL AY563714 795 38 K C 1 AATAAA G-quartet; IR none 10q11.21 chr28:33,147,612–33,148,436 intergenic subtelomeric
BTC1_113FL (XM_611248) CK394057 659 69 K C 5 AATAAA CpG thalamus 1p35.3 chr2:76,776,847–76,779,658 intergenic interstitial
BTC1_115FL CK394060 962 36; 35 C 1 AATAAA none thymus 1p34.1 chr3:67,576,355–67,577,638 LRRC41 interstitial
BTC1_130FL (XM_611254) CK394181 664 125 K; 65 K A 3 AATAAA none adrenal, cerebellum, thalamus 19q13.43 chr18:55591568–55593819 ZIM2 subtelomeric
BTC1_132FL CK394199 2174 none A 1 AATAAA IR; ncRNA thymus Xq25 scaffold4717:48,263–50,399 ERVK6 interstitial
BTC3_7JE CK393999 548 35 A 5 AATAAA none muscle 7p22.1 chr4:43,188,676–43,191,750 intergenic interstitial
BTC1_22JE CK394011 1569 none A 1 ATTAAA IR; ncRNA placentome 5q33.3 scaffold399:92,975–94,544 TIMD4 interstitial
BTC2_43JE CK394035 1043 none C 2 AAACAA G-quartet; CpG cerebrum, thalamus 8q24.3 scaffold12671:9,483–10,533 JRK interstitial
BTC1_51JE CK394043 958 130 C 2 AATAAA none skin 11p15.5 scaffold2079:18,521–19,645 intergenic interstitial
BTC1_100JE CK394097 2381 92 K C 1 GATAAA GY-Box none 19p13.11 chr7:5,772,691–5,775,068 intergenic interstitial
BTC1_104JE (XM_883284) CK394101 619 59; 68 A 5 AATAAA None placentome none scaffold6598:22994–33093 intergenic interstitial
BTC1_113JE CK394107 830 none A 2 AATAAA CpG; ncRNA none 1p13.2 scaffold1237:214289–215207 intergenici interstitial
BTC1_118JE CK394113 2257 50; 92 C 1 AATAAA GY-Box none 22q13.2 scaffold9684:8273–9215 intergenic interstitial
BTC1_144JE CK394138 832 150 K C 1 AATAAA none none 1p36.33 chr16:37642343–37643174 intergenic boundary
BTC1_146JE CK394139 2206 none A 3 ATTAAA IR; ncRNA muscle, skin 14q32.31 chr21:45,674,164–45,678,931 intergenic interstitial
BTC1_203JE CK394182 773 129 K C 3 ATTAAA CpG heart 8q21.2 chr14:46,885,318–46,890,350 intergenic interstitial
BTC1_215JE CK394201 1038 109 K C 1 AATAAA Eu_thiol protease none 2p25.3 scaffold473:40,328–41,349 intergenic interstitial
BTC1_8NG AY563705 703 71 K A 4 AATATA none thalamus none chr19:48,755,357–48,757,924 ATP1a2a interstitial
BTC1_39NG AY563711 767 172 K C 2 AATAAA Proline-rich with_coiled-coil none 1p31.3 scaffold997:257,434–259,042 INADL interstitial
BTC1_58NG AY563715 562 49 C 1 AATAAA CpG cerebrum 13q34 chr12:48,063,584–48,064,091 CDC16: subtelomeric
BTC1_63NG AY563716 483 142 K C 2 unknown signalP; ATPaseE1. E2 none 16p13.12 chr25:14,893,445–14,897,173 intergenic interstitial
BTC1_104NG AY563722 728 144 K; 149 K C 1 AATAAA TOP none 14q32.32 chr21:48,386,644–48,387,349 MKNK2 i subtelomeric
BTC1_149NG AY563726 690 35 C 1 TATAAA CpG skin, testis 22q11.21 chr17:45,366,139–45,366,804 RFNG subtelomeric
BTC1_237NG AY563754 622 67 C 1 AATAAA CpG cerebrum 17q25.3 chr19:47,237,560–47,238,117 intergenic interstitial
BTC1_255NG (XM_596632) AY563763 651 64 C 2 AATAAA CpG;Heavy metal_ion transport muscle 3q29 chr1:43,207,885–43,208,506 intergenic interstitial
BTC1_269NG AY563771 716 116 C 1 ATTAAA CpG none 11q13.3 chr29:41,407,248–41,407,965 intergenic boundary
BTC1_286NG (XM_870778) AY563780 788 36; 184 K C 1 unknown CpG placentome none chr14:662,313–663,087 MAPK8IP2 subtelomeric

a number in parenthesis is the GenBank accession of the cattle RefSeq prediction matching the NT.

b GenBank accession No. of 3' sequence including primer-walked sequence.

c K denotes start-codon of ORF flanked by Kozak consensus.

dC, cattle-specific; A, cetartiodactyla-specific

e 'Unknown' indicates that a polyadenylation signal could not be identified.

f 'IR' indicates presence of an inverse repeat; ADH_DRE, GY-box, K-box, Brd box and CPE are functional UTR elements.

gene symbol indicates NT is located in an intron of that gene.

h "Boundary" indicates that the NT anchors within 1 Mbp of the end of a homologous synteny boundary on a human chromosome as defined in [23];

"Subtelomeric" indicates that the NT aligns within 2 Mbp from the end of a cattle chromosome.