Table 1.
Microsatellite haplotypes observed in exon 11 missense variant carriers.
| Family ID | A/B/C/D | 487-2 | D8S1810 | 420M9-1395 | 317J8-2123 | Exon 11 G>T | T/NT | Hap# | Comment |
| AU025 | 25B | 247.5 | 194 | 190 | 240 | T | NT | 1 | |
| AU025 | 25C | 235.7 | 192 | 202 | 247 | T | NT | 2 | Sister with bipolar disorder |
| AU027 | 27C | 247.5 | 194 | (190) | 246 | T | NT | 3 | Possible extended hap |
| AU044 | 44C | 247.5 | (194) | 190 | 246 | T | NT | 3 | Possible extended hap |
| AU058 | 58A | 245.7 | 176 | 181 | 247 | T | T | 2 | |
| AU058 | 58C | 245.7 | 176 | 181 | 247 | T | T | 2 | |
| AU058 | 58D2 | 245.7 | 176 | 181 | 247 | T | T | 2 | |
| AU059 | 59A | 235.7 | 196 | 202 | 242 | T | T | 4 | |
| AU059 | 59C | 235.7 | 196 | 202 | 242 | T | T | 4 | |
| AU061 | 61B | 237.7 | 178 | 181 | 242 | T | NT | 4 | Extended hap |
| AU071 | 71B | 237.7 | 178 | 181 | 242 | T | NT | 4 | Extended hap |
| AU090 | 90A | 237.7 | 178 | 181 | 242 | T | T | 4 | Extended hap |
| AU090 | 90C | 237.7 | 178 | 181 | 242 | T | T | 4 | |
| AU089 | 89C | 246.4 | 176 | 181 | 242 | T | NT | 4 | Extended hap w recomb? |
| AU113 | 113C | 253.1 | 178 | 186 | 242 | T | NT | 4 | Brother with SCZ |
| AU129 | 129A | 235.7 | 194 | 202 | 246 | T | NT | 3 | De novo in case |
| AU143 | 143B | 243.8 | 194 | 202 | 253 | T | NT | 5 | |
| AU164 | 164B | 241.8 | 178 | 186 | 253 | T | NT | 5 | |
| AU165 | 165B | 239.7 | 196 | 190 | 238 | T | NT | 6 |
The first column contains the family ID number of the autism proband. The second column indicates the family member status, for example 25A signifies the case, 25B signifies the father, 25C signifies the mother and 58D2 indicates the second sibling of case 58. The next 4 columns contain alleles from the 4 microsatellites genotyped to determine which haplotypes are associated with the rare 'T' allele. Alleles were binned where possible with the exception of marker 478–642 wherein the allele is called as reported by the software. Brackets around an allele mean that phase could not be determined with certainty. The "T/NT" column indicates whether the haplotype was transmitted, or not transmitted, from a parent to a case, or the sibling of a case. The "Hap#" column indicates the number of different haplotype backgrounds associated with the 'T' allele considering only the closest microsatellite 317J8-2123 (0.229 Mb away). The comment column notes extended haplotypes > ~1 Mb A question mark next to the haplotype number indicates that the haplotype background could not be determined with certainty.