Table 3.
Evaluation of spotter and full model predictions.
| Kingdom | Type | Number of model predictions | Full model scores | T99 | Pmin | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Full | Spotter | FPS | Min | Q1 | Med | Q3 | Max | ||||
| Archaea | 5S | 47 | 35 | 7 | 2.9 | 12.7 | 20.0 | 35.3 | 50.6 | 34.9 | 0.69 |
| 16S | 47 | 47 | 0 | 1180.8 | 1891.9 | 1937.9 | 2004.0 | 2096.5 | <0 | 1.0 | |
| 23S | 46 | 46 | 1 | 2240.7 | 2714.1 | 2870.7 | 3155.3 | 3267.3 | <0 | 1.0 | |
| Bacteria | 5S | 1339 | 1339 | 123 | 39.9 | 77.7 | 89.5 | 94.6 | 109.6 | 14.0 | 1.0 |
| 16S | 1237 | 1237 | 31 | 721.9 | 1905.5 | 1989.4 | 2058.7 | 2148.5 | <0 | 1.0 | |
| 23S | 1248 | 1248 | 20 | 2502.8 | 3267.8 | 3586.5 | 3690.7 | 3876.1 | <0 | 1.0 | |
| Eukaryotes | 5S | 324 | 324 | 251 | 43.9 | 51.1 | 53.9 | 74.3 | 82.2 | <0 | 1.0 |
| 18S | 13 | 13 | 14 | 625.3 | 625.3 | 1733.1 | 1777.5 | 1777.6 | <0 | 1.0 | |
| 28S | 19 | 19 | 5 | 1434.2 | 2904.7 | 3225.0 | 3335.9 | 3380.9 | <0 | 1.0 | |
This table shows the total number of full models, the number of spotter predictions that had matching full model predictions and the number of false positive spotter model predictions. The characteristics of the full model prediction score distributions are shown. FPS denotes the number of false positive spotter predictions. T99 refers to the lowest score a full model could have while still being detected with 99% probability by a spotter model with positive score. Pmin is the probability that a spotter with positive score would find a full model with the minimum score indicated. The lowest score for a full model score can be used as a lower limit on which results could be expected to be real.