Table 1.
Primer | Sequence |
---|---|
Loopless FW | 5′ TGTTTGCCAGCTTCCC_CACAGGAGAATCGATATC 3′ |
Loopless RV | 5′ GATATCGATTCTCCTGTG_GGGAAGCTGGCAAACA 3′ |
9-Ala Loop FW | 5′ GGGTGTTTGCCAGCTTCCCGCGGCGGCGGCGGCGGCGGCGGCGGCGCACAGGAGAATCGATATCAGG 3′ |
9-Ala Loop RV | 5′ CCTGATATCGATTCTCCTGTGCGCCGCCGCCGCCGCCGCCGCCGCCGCGGGAAGCTGGCAAACACCC 3′ |
5-Ala Loop FW | 5′ TTTGCCAGCTTCCCGCGGCGGCGGCGGCGCACAGGAGAATCGATATC 3′ |
5-Ala Loop RV | 5′ ATCGATTCTCCTGTGCGCCGCCGCCGCCGCGGGAAGCTGGCAAACA 3′ |
4-Ala Loop FW | 5′ TGTTTGCCAGCTTCCCGCGGCGGCGGCGCACAGGAGAATCGATATC 3′ |
4-Ala Loop RV | 5′ GATATCGATTCTCCTGTGCGCCGCCGCCGCGGGAAGCTGGCAAACA 3′ |
3-Ala Loop FW | 5′ GTTTGCCAGCTTCCCGCGGCGGCGCACAGGAGAATCG 3′ |
3-Ala Loop RV | 5′ CGATTCTCCTGTGCGCCGCCGCGGGAAGCTGGCAAAC 3′ |
2-Ala Loop FW | 5′ GGTGTTTGCCAGCTTCCCGCGGCGCACAGGAGAATCGATATC 3′ |
2-Ala Loop RV | 5′ GATATCGATTCTCCTGTGCGCCGCGGGAAGCTGGCAAACACC 3′ |
1-Ala Loop FW | 5′ GGGTGTTTGCCAGCTTCCCGCGCACAGGAGAATCGATATCAG 3′ |
1-Ala Loop RV | 5′ CTGATATCGATTCTCCTGTGCGCGGGAAGCTGGCAAACACCC 3′ |
Loop1-FW | 5′ GTGTTTGCCAGCTTCCC_GAAAACGAATATCCACACA 3′ |
Loop1-RV | 5′ TGTGTGGATATTCGTTTTC_GGGAAGCTGGCAAACAC 3′ |
Lambda Loop FW | 5′ TGTTTGCCAGCTTCCCGGTCCGGGTAAACGTCACAGGAGAATCGATATC 3′ |
Lambda Loop RV | 5′ GATATCGATTCTCCTGTGACGTTTACCCGGACCGGGAAGCTGGCAAACA 3′ |
Loop2-FW | 5′ CTTCCCAGCGAGAATGAT_CACAGGAGAATCGATATC 3′ |
Loop2-RV | 5′ GATATCGATTCTCCTGTG_ATCATTCTCGCTGGGAAG 3′ |
The underlined nucleotides in insertion primers (9-Ala, 5-Ala, 4-Ala, 3-Ala, 2-Ala, 1-Ala and Lambda-loop) indicate the nucleotides inserted into loopless sequence. The underlined space in deletion primers (Loopless, Loop1-, Loop2-)indicates where the deletion occurred in wild-type sequence.