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. 2007 Apr 16;35(9):2924–2935. doi: 10.1093/nar/gkm126

Table 1.

Primers for site-directed mutagenesis

Primer Sequence
Loopless FW 5′ TGTTTGCCAGCTTCCC_CACAGGAGAATCGATATC 3′
Loopless RV 5′ GATATCGATTCTCCTGTG_GGGAAGCTGGCAAACA 3′
9-Ala Loop FW 5′ GGGTGTTTGCCAGCTTCCCGCGGCGGCGGCGGCGGCGGCGGCGGCGCACAGGAGAATCGATATCAGG 3′
9-Ala Loop RV 5′ CCTGATATCGATTCTCCTGTGCGCCGCCGCCGCCGCCGCCGCCGCCGCGGGAAGCTGGCAAACACCC 3′
5-Ala Loop FW 5′ TTTGCCAGCTTCCCGCGGCGGCGGCGGCGCACAGGAGAATCGATATC 3′
5-Ala Loop RV 5′ ATCGATTCTCCTGTGCGCCGCCGCCGCCGCGGGAAGCTGGCAAACA 3′
4-Ala Loop FW 5′ TGTTTGCCAGCTTCCCGCGGCGGCGGCGCACAGGAGAATCGATATC 3′
4-Ala Loop RV 5′ GATATCGATTCTCCTGTGCGCCGCCGCCGCGGGAAGCTGGCAAACA 3′
3-Ala Loop FW 5′ GTTTGCCAGCTTCCCGCGGCGGCGCACAGGAGAATCG 3′
3-Ala Loop RV 5′ CGATTCTCCTGTGCGCCGCCGCGGGAAGCTGGCAAAC 3′
2-Ala Loop FW 5′ GGTGTTTGCCAGCTTCCCGCGGCGCACAGGAGAATCGATATC 3′
2-Ala Loop RV 5′ GATATCGATTCTCCTGTGCGCCGCGGGAAGCTGGCAAACACC 3′
1-Ala Loop FW 5′ GGGTGTTTGCCAGCTTCCCGCGCACAGGAGAATCGATATCAG 3′
1-Ala Loop RV 5′ CTGATATCGATTCTCCTGTGCGCGGGAAGCTGGCAAACACCC 3′
Loop1-FW 5′ GTGTTTGCCAGCTTCCC_GAAAACGAATATCCACACA 3′
Loop1-RV 5′ TGTGTGGATATTCGTTTTC_GGGAAGCTGGCAAACAC 3′
Lambda Loop FW 5′ TGTTTGCCAGCTTCCCGGTCCGGGTAAACGTCACAGGAGAATCGATATC 3′
Lambda Loop RV 5′ GATATCGATTCTCCTGTGACGTTTACCCGGACCGGGAAGCTGGCAAACA 3′
Loop2-FW 5′ CTTCCCAGCGAGAATGAT_CACAGGAGAATCGATATC 3′
Loop2-RV 5′ GATATCGATTCTCCTGTG_ATCATTCTCGCTGGGAAG 3′

The underlined nucleotides in insertion primers (9-Ala, 5-Ala, 4-Ala, 3-Ala, 2-Ala, 1-Ala and Lambda-loop) indicate the nucleotides inserted into loopless sequence. The underlined space in deletion primers (Loopless, Loop1-, Loop2-)indicates where the deletion occurred in wild-type sequence.