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. 2007 Apr 25;35(9):e71. doi: 10.1093/nar/gkm093

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© 2007 The Author(s)

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.0/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — Differentially expressed genes selected using spline or MAS5 Affymetrix selection. MA plots of scaled log-transformed signals for probe sets from two experimental conditions of the B6.1 cells, using the same dataset and color codes as in Figure 4. (A) Distribution of 555 genes (P-value = 0.05) selected upon a spline fit. (B) Distribution of 555 genes selected by MAS5 (FC = 1.8). (C) Distribution of genes selected by both approaches. (D) Distribution of genes selected by EV (spline fit) alone. (E) Genes selected by FC on MAS5 alone.