Table 1.
Primer Pair | Primer | Length (bp) | Tm* (°C) | Primer Sequence (5' to 3') | Mutagenesis method |
P1 | A3consF | 43 | 78 | gctttatgatagtagtgatgctgataattataataaggaaagc | QuickChange™ site-directed method |
A3consR | 43 | 78 | gctttccttattataattatcagcatcactactatcataaagc | ||
P2 | A3overF | 49 | 79 | gatagtagtgatgctgat ↓ aattataataaggagagctttttatataatg | Overlapping primer method [19] |
A3overR | 55 | 80 | gctttccttattataatt ↓ atcagcatcactactatcataaagctttaaattatcc | ||
P3 | A3reF | 27 | 73(62) | cgcggatccaattataataaggaaagc | ExSite™, inverse [18] and RE-mediated inverse PCR methods |
A3reR | 34 | 79(69) | cgcggatccatcagcatcactactatcataaagc | ||
P4 | PdxkF | 34 | 78(67) | cgcggatccaatctaaattttctttgggtatgtg | RE-mediated inverse PCR method |
PdxkR | 38 | 79(67) | cgcggatcctttccttcttaattcaagtatatttttgg |
* The Tm's were calculated according to the Stratagene formula: 81.5 + 0.41(%GC) - 675/N) or for primer pairs P3 and P4 with the Rychlik et al. formula: 69.3 + 0.41(%GC) - (650/N) [26] as indicated in parentheses.
↓ indicates where the deletions are made with the overlapping primers.