TABLE 5.
Genes in the PhoU mutant JHU-313 that are upregulated twofold and above in DNA microarray analysis relative to wild-type strain W3110a
| Description | Genes |
|---|---|
| Pho regulon genes | phoE, -A, -U, -B, -R, -H |
| pstS, -B, -A, -C | |
| phnC, -D | |
| psiF, ugpB | |
| Flagellar genes | fliA, -C, -D, -E, -F, -G, -H, - I, -J, -K, -L, -M, -N, -O, -P, -Q, -R, -S, -T, -Z |
| flgA, -B, -C, -E, -F, -G, -H, -D, -I, -K, -J, -L, -M, -N | |
| motA, -B | |
| flhB, -C, -A, -D, -E | |
| Chemotaxis genes | cheA, -B, -W, -Y, -R |
| aer, trg, tar, tsr | |
| Two-component systems and TA modules | arcA, cheA, cheZ, yoeB |
| Regulators, repressor, and small RNA | sgrS, betI, spoT, malT, stpA, glnK, yefM, ycfQ, crl, rtT, isrB, rpsU, iscR, iscU, iclR, trpR, sspA |
| Transporter systems | proV, X, artJ, fiu, proW, kptP, livJ, hisJ, copA, aroP, yhgL, yaeC, yebM, yicE, gltI, livG, oppA, metN, I, T, trxB, secG, fhuE cusF, -B, -X |
| Metabolic enzymes | purK, -E, -M, -D, -N, -C, -F, -L, -H, -B |
| carA, -B | |
| nuoA, -B, -C, -E, -F, -G, -M | |
| argG, -A, -D, -C | |
| cyoA, -B | |
| sdhA, -D, -C, -B | |
| pyrB, -I, -D, -C, -L | |
| sucA, -B, -C | |
| aceB, -E | |
| nrdF, -I, -H, -E | |
| sodA, -B | |
| yeaA, -F | |
| aroL, ilvC, acnB, aceA, folE, ent, yojH, fadA |
a
Selected genes from a list of 350 genes upregulated twofold and above are grouped according to function and are listed here. See the supplemental material for complete array data.