Figure 5.

Relationship between the TRE and the known gene distributions in ENCODE regions. (A) The distributions of TREs and known genes in ENCODE regions; 150-kb genomic subregions were used. (B) The correlation between the numbers of TREs and known genes in each 150-kb subregion compared with its null distribution, N(0.14, 0.06²). (C) The counts of actual TREs within a 1-kb window of gene TSSs, TESs, and TMSs, compared with their corresponding null distributions. All three null distributions are Gaussian-like and almost identical to N(20, 5²), which is shown in the plot. (D) Comparison of the actual counts with their corresponding random background, which is depicted as the mean and ±1 SD of each null distribution.