Table 2.

Comparison of ranked target lists between the 50 b every 50-b and the PCR product array platforms

Comparison of ranked target lists for the top 75 targets from the 50 b every 50-b array data set with the top 75 targets from the PCR product array data set. (A) The upper panel displays the false-positive rates (FPR) calculated for each list considered separately. (B) The lower panel displays the results after merging the list of the top 75 targets from the 50-b array data set with the list of the top 75 targets from the PCR product array data set. As for Table 1, this comparison is performed, by first creating the union of the two separate lists and then counting the number of union target regions specific to either the 50-b arrays or the PCR product arrays or those targets identified by both platforms. In each of these three categories, the union regions that were tested for validation are displayed as well as the associated false-positive rate. Supplemental Table 3 is a similar comparison between the 50-b and PCR arrays with a more restrictive list of targets (top 33) from the PCR product array (with a lower false-positive rate).