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. 2007 Apr 22;35(9):3128–3143. doi: 10.1093/nar/gkm169

Table 1.

Spin-labeled RNA and their corresponding masses; the chemistry used for the preparation is indicated by a cross, a: RNA6 is non-self-complementary

RNA Sequence Method Calc. mass (g mol−1) Meas. mass (g mol−1)

TBDMS ACE
1 3′ CGA CUA UAG UCG × 3958.6 3963.4
5′ GCU GAU AUC AGC
2 3′ CUG ACU AGU CAG × 3958.6 3962.1
5′ GAC UGA UCA GUC
3 3′ GCU GAC UAU AGU CAG C 5′ × 5244.3 5248.4
5′ CGA CUG AUA UCA GUC G 3′
4 3′ CGA CAU AUG UCG 5′ × × 3958.6 3960.0
5′ GCU GUA UAC AGC 3′
5 3′ GCA CAU ACG UAU GUG C 5′ × 5244.3 5244.5
5′ CGU GUA UGC AUA CAC G 3′
6a 3′ CGA GUG AUA CAU CGC 5′ × 4938.1 4938.5
5′ GCU CAC UAU GUA GCG 3′ 4915.1 4920.6