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. 2006 Jun 8;1(5):153–155. doi: 10.6026/97320630001153

Table 1. Distribution of secondary structure states (left) and confusion matrix for turn states assignments (right).

α β coila turnsb,c DSSP STRIDE XTLSSTR PSEA DEFINE SECSTR KAKSI SEGNO
DSSP 37.42 21.61 19.78 21.19b(20.53)c -- 89.03 76.39 85.48 59.30 84.28 74.70 87.55
STRIDE 38.88 22.16 19.06 19.90 (20.24) 94.49 -- 79.33 88.53 59.78 85.12 79.07 91.22
XTLSSTR 41.04 19.57 19.57 19.82 (11.39) 81.32 79.55 -- 83.76 58.46 74.50 77.22 85.53
PSEA 34.04 24.01 15.70 26.25 69.27 67.53 63.81 -- 59.75 65.77 73.26 76.16
DEFINE 28.36 25.92 14.76 30.96 40.80 39.87 38.71 50.52 -- 38.56 46.38 44.51
SECSTR 38.74 20.33 21.24 19.69 90.73 86.20 75.17 87.50 60.11 -- 77.14 87.03
KAKSI 39.49 22.02 15.53 22.97 71.78 72.40 68.53 88.12 59.40 67.68 -- 77.40
SEGNO 35.94 22.41 19.62 22.02 84.11 82.77 77.30 89.83 59.29 77.64 76.74 --

a coil state frequency corresponds to residues not associated to α-helix, β-strand or turns. b turn state frequency corresponds to residues assigned as β-turn and not associated to α-helix or β-strand (our assignment). c number in parenthesis are the frequency of turns originally given by the corresponding methods (original assignment method). For DSSP, it corresponds to turn and bent state.