Table 1. Distribution of secondary structure states (left) and confusion matrix for turn states assignments (right).
α | β | coila | turnsb,c | DSSP | STRIDE | XTLSSTR | PSEA | DEFINE | SECSTR | KAKSI | SEGNO | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
DSSP | 37.42 | 21.61 | 19.78 | 21.19b(20.53)c | -- | 89.03 | 76.39 | 85.48 | 59.30 | 84.28 | 74.70 | 87.55 |
STRIDE | 38.88 | 22.16 | 19.06 | 19.90 (20.24) | 94.49 | -- | 79.33 | 88.53 | 59.78 | 85.12 | 79.07 | 91.22 |
XTLSSTR | 41.04 | 19.57 | 19.57 | 19.82 (11.39) | 81.32 | 79.55 | -- | 83.76 | 58.46 | 74.50 | 77.22 | 85.53 |
PSEA | 34.04 | 24.01 | 15.70 | 26.25 | 69.27 | 67.53 | 63.81 | -- | 59.75 | 65.77 | 73.26 | 76.16 |
DEFINE | 28.36 | 25.92 | 14.76 | 30.96 | 40.80 | 39.87 | 38.71 | 50.52 | -- | 38.56 | 46.38 | 44.51 |
SECSTR | 38.74 | 20.33 | 21.24 | 19.69 | 90.73 | 86.20 | 75.17 | 87.50 | 60.11 | -- | 77.14 | 87.03 |
KAKSI | 39.49 | 22.02 | 15.53 | 22.97 | 71.78 | 72.40 | 68.53 | 88.12 | 59.40 | 67.68 | -- | 77.40 |
SEGNO | 35.94 | 22.41 | 19.62 | 22.02 | 84.11 | 82.77 | 77.30 | 89.83 | 59.29 | 77.64 | 76.74 | -- |
a coil state frequency corresponds to residues not associated to α-helix, β-strand or turns. b turn state frequency corresponds to residues assigned as β-turn and not associated to α-helix or β-strand (our assignment). c number in parenthesis are the frequency of turns originally given by the corresponding methods (original assignment method). For DSSP, it corresponds to turn and bent state.