Table 1.
Sequences of Primers Used in This Study
VH con | 5′-CTGTCGACACGGCCGTGTATTACTG-3′ |
JH con | 5′-AACTGCTGAGGAGACGGTGACC-3′ |
Vγ 1–8 | 5′-ACCAGGAGGGGAAGGCCCCACAG-3′ |
Vγ 9 | 5′-GGAAAGGAATCTGGCATTCCG-3′ |
Vγ 10 | 5′-AATCCGCAGCTCGACGCAGCA-3′ |
Vγ 11 | 5′-GCTCAAGATTGCTCAGGTGGG-3′ |
Jγ 1/2 | 5′-ACCTGTGACACCAAGTGTTGTTC-3′ |
Jγ P1/2 | 5′-AGTTACTATGAGCT(CT)TAGTCCC-3′ |
Jγ P | 5′-TGTAATGATAAGCTTTGTTCC-3′ |
Vβ 1/5 | 5′-ACAGCAAGTGAC〈TAG〉CTGAGATGCTC-3′ |
Vβ 2 | 5′-GAGTGCCGTTCCCTGGACTTTCAG-3′ |
Vβ 3 | 5′-GTAACCCAGAGCTCGAGATATCTA-3′ |
Vβ 4 | 5′-TCCAGTGTCAAGTCGATAGCCAAGTC-3′ |
Vβ 6.a | 5′-ATGTAACT〈CT〉TCAGGTGTGATCCAA-3′ |
Vβ 6.b | 5′-GTGTGATCCAATTTCAGGTCATAC-3′ |
Vβ 7 | 5′-TACGCAGACACCAA〈GA〉ACACCTGGTCA-3′ |
Vβ 8 | 5′-GGTGACAGAGATGGGACAAGAAGT-3′ |
Vβ 9 | 5′-CCCAGACTCCAAAATACCTGGTCA-3′ |
Vβ 10 | 5′-AAGGTCACCCAGAGACCTAGACTT-3′ |
Vβ 11 | 5′-GATCACTCTGGAATGTTCTCAAACC-3′ |
Vβ 12 | 5′-CCAAGACACAAGGTCACAGAGACA-3′ |
Vβ 13 | 5′-GTGTCACTCAGACCCCAAAATTCC-3′ |
Vβ 14 | 5′-GTGACCCAGAACCCAAGATACCTC-3′ |
Vβ 15 | 5′-GTTACCCAGACCCCAAGGAATAGG-3′ |
Vβ 16 | 5′-ATAGAAGCTGGAGTTACTCAGTTC-3′ |
Vβ 17 | 5′-CACTCAGTCCCCAAAGTACCTGTT-3′ |
Vβ 18 | 5′-TGCAGAACCCAAGACACCTGGTCA-3′ |
Vβ 19 | 5′-ACAAAGATGGATTGTACCCCCGAA-3′ |
Vβ 20 | 5′-GTCAGATCTCAGACTATTCATCAATGG-3′ |
Vβ 21 | 5′-CAGTCTCCCAGATATAAGATTA〈TC〉AGAG-3′ |
Vβ 22 | 5′-GGTCACACAGATGGGACAGGAAGT-3′ |
Vβ 23 | 5′-CTGATCAAAGAAAAGAGGGAAACAGCC-3′ |
Vβ 24 | 5′-CAAGATACCAGGTTACCCAGTTTG-3′ |
Vβ 25 | 5′-GACAGAAAGCAAAATTATATTGTGCC-3′ |
3′Jβ 1.2 | 5′-TACAACGGTTAACCTGGTCCCCGA-3′ |
5′Jβ 1.2 | 5′-TAACCTGGTCCCCGAACCGAAGG-3′ |
3′Jβ 1.3 | 5′-CACCTACAACAGTGAGCCAACTT-3′ |
5′Jβ 1.3 | 5′-GCCAACTTCCCTCTCCAAAATATATGG-3′ |
3′Jβ 1.5 | 5′-CCAACTTACCTAGGATGGAGAGTCGA-3′ |
5′Jβ 1.5 | 5′-GATGGAGAGTCGAGTCCCATCAC-3′ |
3′Jβ 1.6 | 5′-CCTGGTCCCATTCCCAAAGTGGA-3′ |
5′Jβ 1.6 | 5′-CCCATTCCCAAAGTGGAGGGGTG-3′ |
3′Jβ 2.2 | 5′-CCTTACCCAGTACGGTCAGCCTA-3′ |
5′Jβ 2.2 | 5′-AGTACGGTCAGCCTAGAGCCTTCT-3′ |
3′Jβ 2.6 | 5′-CAGCCGCCGCCTTCCACCTGAAT-3′ |
5′Jβ 2.6 | 5′-CGGCCCCGAAAGTCAGGACGTT-3′ |
3′Jβ 2.7 | 5′-TCCATCGTTCACCTTCTCTCTAAACA-3′ |
5′Jβ 2.7 | 5′-GCCCGAATCTCACCTGTGACCGTG-3′ |
Jβ 2.4 | 5′-CCAGCTTACCCAGCACTGAGAGC-3′ |
〈 〉 denotes a mixture of nucleotides at that position.
Vβ primers 7, 9, and 18 expectedly cross-react with members of all of these three Vβ families and are, therefore, used in a mix at a concentration of 14 nmol/L and 50 nmol/L each for first round and second round amplifications, respectively.