Table 2.
Relatedness of genes of the 4.3 and 23 Mb syntenic regions of Arabidopsis in pairwise comparisons of coding regions at the nucleotide and protein levels.
| 4.3 Mb region locus | Coding function | 23 Mb region locus | Coding function | % nucleotide identity1 | % amino acid identity/similarity1 |
| At1g12610 (DDF1) | DREB subfamily Transcription factor | At1g63030 (DDF2) | DREB subfamily Transcription factor | 79% | 77%/86% |
| At1g12630 | DREB subfamily Transcription factor | At1g63040 | DREB subfamily Transcription factor pseudogene | 76% | 65%/78% |
| At1g12640 | O-acyl transferase protein | At1g63050 | O-acyl transferase protein | 84% | 83%/89% |
| At1g12710 | F-box family protein | At1g63090 | F-box family protein | 81% | 76%/88% |
| At1g12730 | CDC-like protein | At1g63110 | CDC-like protein | 83% | 76%/84% |
| At1g12750 | Rhomboid family protein | At1g63120 | Rhomboid family protein | 78% | 65%/76% |
| At1g12760 | Zinc finger protein | At1g63170 | Zinc finger protein | 80% | 75%/83% |
| At1g12780 | UDP-glucose epimerase | At1g63180 | UDP-glucose epimerase | 86% | 89%/93% |
1 identity and similarity were calculated with the sequence alignment program blast2sequences http://www.ncbi.nlm.nih.gov/blast to compare whole coding regions.