Table 1.
Abundance values of tags corresponding to genes involved in embryogenesis
| Tag | WT | Otx2−/− | GenBank match |
|---|---|---|---|
| TCTAATGACT | 1 | 1 | Nodal gene, a TGF-β-like gene |
| AAAGCCAAGC | 1 | 1 | Lim1, putative transcription regulator |
| CAATTCCTGA | 0 | 1 | Cerberus-related 1 (Cerr1) |
| AGGCTGAGCT | 4 | 0 | Embryonic ectoderm development protein (eed) |
| CAGAGGCAGG | 0 | 2 | Wnt-4 |
| TTCACTCTGG | 1 | 0 | Fibroblast growth factor receptor 1 (bFGF-R) |
| CTCTTGCCCC | 1 | 0 | Fibroblast growth factor 4 (FGF-4) |
| GTGCTGGAGA | 1 | 2 | Fibroblast growth factor 8 (FGF-8) |
| ATATTTATGT | 2 | 0 | Fibroblast growth factor (FGF-15) |
| CCATCTGGTG | 3 | 0 | Transforming growth factor α (TGFα) |
| TAATTGCTGT | 2 | 0 | Distal-less homeobox 1 (Dlx-1) |
| GATGCCGTGG | 1 | 3 | Gl/S-specific cyclin D3 |
| TCCCTGAGTT | 1 | 0 | E-cadherin |
| TGGAGGTGGA | 2 | 2 | Smad3 |
| AGAAAGATGC | 1 | 1 | Smad4 |
The sequence of the tag is given along with its abundance in the WT and Otx2−/− libraries, as well as the identity of the transcript from which it originates. Bold characters indicate that differential expression was confirmed by in situ hybridization.