Table 3.
List of tags present at lower levels in the Otx2−/− than in the WT library
| Tag | WT | KO | WT/KO | P | GenBank match |
|---|---|---|---|---|---|
| CTCCTGCCCC | 9 | 0 | >9 | 0.01 | ClpP protease (AJ005253) |
| CTAGAGGAAA | 9 | 1 | 9.0 | 0.03 | EST 1005223 (AA606898) |
| ATGCCGCCCC | 8 | 1 | 8.0 | 0.04 | Nonmuscle tropomyosin 5 (X53753) |
| GTCGTGACAG | 8 | 1 | 8.0 | 0.04 | p68 RNA helicase (X65627) |
| TTCAATTTAA | 8 | 1 | 8.0 | 0.04 | ESTs (AI047965; AA967648) |
| CAACAAAGGT | 7 | 0 | >7 | 0.02 | HSP60 protein (X53584) |
| ATAGTTGCTA | 6 | 0 | >6 | 0.03 | EST 577496 (AA139307) |
| ACAGAGATGA | 5 | 0 | >5 | 0.05 | ESTs, similar to human hypothetical protein (Q15004) |
| ACCATCCTGA | 13 | 3 | 4.3 | 0.01 | rbm3 (AB016424) |
| TCTTGTGAAA | 12 | 3 | 4.0 | 0.02 | EST 597651 (AI447986) |
| AGCTGAAGGT | 21 | 6 | 3.5 | 0.01 | Suil (Z50159) |
| ACCTTTGCAT | 10 | 3 | 3.3 | 0.05 | Protein arginine methyltransferase (Carm1) (AF117887) |
| AAGAAGCCAC | 46 | 19 | 2.4 | 0.00 | Pyrubate kinase M (D38379) |
| TGATTCCCTC | 48 | 21 | 2.3 | 0.00 | External transcribed spacer (X56974) |
| CACATCTCAA | 50 | 24 | 2.1 | 0.00 | 24.6-kDa protein (M93980) |
| TTGTTACAGA | 33 | 19 | 1.7 | 0.04 | EST J1008D06 (AU041730) |
| TCTACCATTT | 40 | 24 | 1.7 | 0.04 | EST, highly similar to human 40S ribosomal protein (AI931810) |
| TCTCTTCCCA | 90 | 56 | 1.6 | 0.01 | Ribosomal protein S4 (Rps4) (M73436) |
| TGATGCCCTC | 466 | 306 | 1.5 | 0.00 | α-Galactosidase A (U34071) |
| TGACTCCCTC | 1118 | 955 | 1.2 | 0.00 | B2 repetitive sequence (M31447) |
| TGACGCCCTC | 461 | 394 | 1.2 | 0.02 | Pelle-like protein kinase (AF103876) |
The content of each column is similar to that described in Table 2. Additional data will be available at http://www.dsv.cea.fr/thema/get/sade.html.