Table 2.

False negative (FN) vs. false positive (FP) rates on test and intergenic data sets for acceptor sites

FN(%)	FP(%)
	GS-test	GS-intg	GSESE-test	GSESE-intg
0.5	14.27	29.58	12.47	20.67
1	10.03	23.39	8.09	15.74
2	7.11	18.51	5.80	11.30
3	5.64	15.76	4.21	9.00
5	4.00	12.41	2.94	6.56
7	3.13	10.43	2.18	5.20
10	2.32	8.41	1.62	4.01
15	1.55	6.20	1.05	2.74
20	1.10	4.86	0.71	2.01

Rates on test data are obtained from a 5-fold CV procedure on the ESEAra data set, while FP rates on intergenic data are averages of the FP rates obtained on INTAra by setting a threshold that would produce the same FN rate on each of the 5 fold test data.