Table 1.
Average % pairwise identity detected among HRV nucleotide sequences
Genome locus | HRV ave (min, max)* | HRVA ave (min, max)** | HRVB ave (min, max)# | HRVAvsHRVB ave (min, max)$ |
Genome | 68 (56,88) | 74 (69,88) | 75 (71,82) | 57 (56,58) |
5'NCR | 77 (64,95) | 82 (74,95) | 84 (78,91) | 68 (64,71) |
1A | 74 (53,90) | 82 (75,90) | 80 (75,86) | 58 (53,63) |
1B | 69 (59,88) | 73 (66,88) | 74 (69,78) | 62 (59,65) |
1C | 66 (53,87) | 71 (65,87) | 73 (66,80) | 56 (53,59) |
1D | 63 (48,87) | 70 (63,87) | 72 (68,78) | 50 (48,53) |
2A | 68 (43,89) | 78 (68,89) | 73 (68,81) | 48 (43,52) |
2B | 67 (46,87) | 75 (63,87) | 75 (66,82) | 52 (46,57) |
2C | 67 (53,89) | 72 (61,89) | 76 (70,84) | 55 (53,57) |
3A | 67 (49,91) | 72 (60,91) | 76 (67,86) | 55 (49,61) |
3B | 69 (48,94) | 75 (48,94) | 70 (54,86) | 57 (48,70) |
3C | 68 (53,88) | 75 (68,88) | 73 (69,83) | 56 (53,60) |
3D | 69 (58,87) | 73 (67,87) | 74 (70,82) | 60 (58,62) |
3'NCR | ND | ND | ND | ND |
*n = 34; **n = 27; #n = 7; $n = 34