TABLE 1.
Bacteria isolated or collected during this study, with available information about their origins and presumptive identifications, based on phenotypic characteristics in API systems, and the accession numbers of deposited sequencesa
| Isolate | Presumptive identification | Origin | Original area or country | Definitive identification | EMBL library accession no.
|
|
|---|---|---|---|---|---|---|
| 16S rRNA gene | sodA | |||||
| LD40 isolates | ||||||
| C6 | L. lactis/E. faecalis | ? | Poitou-Charentes | |||
| C22 | L. lactis/E. faecalis | ? | Poitou-Charentes | L. lactis | AM490366 | |
| 1609 | E. faecalis | ? | Poitou-Charentes | |||
| 5076 H | S. uberis? | ? | ? | S. dysgalactiae subsp. equisimilis | AM490331 | |
| 5076 NH | L. garvieae? | ? | ? | Aerococcus sp. | AM490332 | |
| 28565-2 | Aerococcus | ? | ? | Aerococcus sp. | AM490327 | |
| 6491-93 | ? | Natural environment | Pyrenees | |||
| 2725-99 | L. garvieae | Oncorhynchus mykiss | ? | |||
| 1798-00 | L. lactis | O. mykiss | Aquitaine | |||
| 2188-00 | E. faecium | O. mykiss | Aquitaine | E. casseliflavus | AM490321 | |
| 3362-01 | A. viridans | O. mykiss | Poitou-Charentes | V. fluvialis/carniphilus | AM490373 | |
| 3363-01 | S. acidominimus | O. mykiss | Poitou-Charentes | |||
| 3364-01 | E. faecalis | O. mykiss | Poitou-Charentes | C. maltaromaticum | Am490329 | |
| 3365-01 | E. faecalis | O. mykiss | Poitou-Charentes | |||
| 3366-01 | S. anginosus | O. mykiss | Poitou-Charentes | L. lactis cremoris | AM490365 | |
| 3525-01 | S. dysgalactiae/S. equisimilis | Acipenser baeri | Aquitaine | S. dysgalactiae subsp. dysgalactiae | AM490330 | |
| 3667-01 | E. faecium/S. bovis | O. mykiss | Brittany | |||
| 2514-02 | L. garvieae | O. mykiss | Aquitaine | |||
| 952-03 | ? | O. mykiss | Aquitaine | |||
| JIP collection | ||||||
| 112-82 (2) | Streptococcus sp. | Paracheirodon innesi | Ile-de-France | |||
| 108-83 (4) | Streptococcus sp. | Channa striata | Thailand | S. iniae | AM490314 | |
| 20-85 (3) | C. piscicola | O. mykiss | Picardy | |||
| CII-5b-88 | Streptococcus sp. | Channa striata | Bangkok | |||
| 31-90 (2) | Streptococcus sp. | Tilapia | Belgium | L. garvieae | AM490328 | |
| 08-92 (1) | S. parauberis? | Tilapia | Lorraine | |||
| 18-93 (2) | V. salmoninarum | O. mykiss | Aquitaine | V. salmoninarum | AM490319 | |
| 18-93 (4) | V. salmoninarum | O. mykiss | Aquitaine | |||
| 10-94 (4) | L. lactis | Pterophyllum scalare | Alsace | |||
| 12-94 (2) | L. piscium? | Betta splendens | MNHN, Paris | |||
| 21-96 (1) | Streptococcus sp. | O. mykiss | Réunion Island | |||
| 21-96 (2) | Streptococcus sp. | O. mykiss | Réunion Island | |||
| 22-96 (2) | L. piscium? | Koi carp | Jura | L. raffinolactis | AM490322 | |
| 23-98 (C11a) | L. lactis | O. mykiss | Aquitaine | |||
| 31-98 (3) | L. lactis? | Tilapia | Brittany | L. lactis subsp. lactis | AM490364 | |
| 25-99 | S. mundtii? | Trout diet | Brittany | E. faecium | AM490323 | |
| 26-99 | Streptococcus sp. | Fish farm water | Brittany | E. faecium | AM490325 | |
| 29-99 | L. garvieae | O. mykiss | Brittany | |||
| 19-00(2) | C. piscicola | P. innesi | Hong Kong | |||
| 20-00 | Leuconostoc? | Carassius carassius | Jura | V. salmoninarum | AM490375 | AM490320 |
| 38-00 (3) | Lactococcus sp. | Symphysodon discus | Ile-de-France | |||
| 10-01 | Leuconostoc? | Koi carp | Jura | L. raffinolactis | AM490367 | AM490311 |
| 14-01 | V. salmoninarum? | C. carassius | Jura | V. fluvialis/carniphilus | AM490371 | |
| Me I.5-02 | C. piscicola | O. mykiss | Brittany | |||
| Other origins | ||||||
| France | ||||||
| 1525A | S. parauberis | Dicentrarchus labrax | SAVU | |||
| 1525E | S. parauberis | D. labrax | SAVU | S. parauberis | AM490317 | |
| 1534E | S. parauberis | D. labrax | SAVU | |||
| Israel | ||||||
| KF 173 | S. iniae | O. mykiss | A. Eldar | |||
| KFP 404 | S. iniae | O. mykiss | A. Eldar | |||
| Spain | ||||||
| 17-02 | Enterococcus sp. | O. mykiss | M. Blanco | E. gallinarum | AM490318 | |
| 18-02 | Enterococcus sp. | O. mykiss | M. Blanco | V. fluvialis/carniphilus | AM490372 | |
| 24-01 | S. mutans? | O. mykiss | Trouw, Spain | |||
| 26-01 | S. mutans? | O. mykiss | Trouw, Spain | Lactococcus sp. | AM490370 | AM490324 |
| 27-01 (2) | Lactococcus sp./Gemella | O. mykiss | Trouw, Spain | V. salmoninarum | AM490374 | AM490326 |
| 28-01 | S. mutans? | O. mykiss | Trouw, Spain | L. raffinolactis | AM490368 | |
| United Kingdom | ||||||
| CF 00021 | L. garvieae | O. mykiss | CEFAS | |||
| CF 01144 | L. garvieae | O. mykiss | CEFAS | |||
| CF 01173 | S. agalactiae | O. mykiss | CEFAS | |||
a
Abbreviations: CEFAS, Center for Environment, Fisheries and Aquaculture Science, Weymouth, United Kingdom; JIP, Jouy Ichtyopathology collection, INRA, Jouy-en-Josas, France; LV40, Laboratoire Départemental des Landes, Mont-de-Marsan, France; MNHN, Museum National d'Histoire Naturelle, Paris, France; and SAVU, Service d'Assistance Vétérinaire Aquacole d'Urgence, Saint Jean de Vedas, France.