Fig. 5.

The structure of kinesin on MT shown in colors based on the protocol discussed in the main text. (A) The residues colored in red and magenta on the T (structure on the left) are those maintaining more contact than the residues in the L (structure on the right). Some of the residues in the colored region of the T are involved with the nucleotide binding site. (B) The enlarged view in cartoon representation from the neck-linker docking site (Left) and from the ligand binding site (Right). Sphere representations in orange are ADP molecules. The network of contact pairs is depicted with yellow lines.