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. 2007 May;176(1):571–584. doi: 10.1534/genetics.106.068361

TABLE 3.

Additive and interacting effects of QTL × environment of identified QTL for the traits associated with SWSC and TWG

Trait QTL Flanking marker Sitea (cM) LOD Ab H2(A) (%)b AE1c H2(AE1) (%)c
SWSCF QSwscf.cgb-1A.1 WMC59–WMC254 10 10.26 −0.456** 4.34 0.526** 11.55
QSwscf.cgb-1D.1 WMC432–WMC222 0 3.72 0.299** 1.87 0.336* 4.71
QSwscf.cgb-2D.1 WMC453.1–WMC18 0 7.77 −0.404** 3.41 −0.421** 7.40
QSwscf.cgb-2D.2 WMC41–WMC170 0 3.11 0.225* 1.06
QSwscf.cgb-4A WMC420–Xgwm601 3 5.44 −0.338** 2.39 0.305* 3.88
QSwscf.cgb-4B.1 Xgwm368–Xgwm107 15 4.93 −0.459** 8.80
QSwscf.cgb-7B.1 CWM467–CWM466 0 7.52 −0.436** 3.97 −0.387** 6.25
QSwscf.cgb-7D Xgdm88–WMC463 0 3.41 0.354** 2.62
SWSCG QSwscg.cgb-4A Xgwm610–Xgwm397 4 5.29 −0.703** 5.60 0.739* 10.50
SWSCM QSwscm.cgb-1A.1 CWM516–CWM517 0 4.09 −0.240** 7.53
QSwscm.cgb-6B.1 Xgwm219–WMC341 0 3.18 −0.138* 2.49 0.218* 12.43
AESWC QAeswc.cgb-1A.1 P3156-250–WMC59 0 4.01 2.965** 7.73
QAeswc.cgb-2A.1 Xgwm372–Xgwm448 0 4.76 −4.080** 7.32 3.306** 9.61
QAeswc.cgb-3B.1 P3622-400–P2076-147 4 4.41 −3.251** 4.65
QAeswc.cgb-5A P2470-280–Xgwm154 0 5.89 −2.509** 2.77 3.770** 12.50
QAeswc.cgb-7B.1 WMC311–CWM467 2 5.13 2.059** 1.86 2.416* 5.13
QAeswc.cgb-7D.1 WMC436–Xgwm44 9 5.16 3.405** 5.10
RESWC QReswc.cgb-1A Xgwm135–CWM516 4 4.18 1.758** 6.24
QReswc.cgb-3B Xgwm547–Xgwm181 1 3.14 −1.357** 3.72
QReswc.cgb-7A.1 P2071-180–Xgwm260 3 4.45 1.858** 6.97 −1.798** 13.05
TGWG QTgwg.cgb-2A.1 P2478-160–WMC27.2 16 4.48 0.602** 5.19
QTgwg.cgb-4A.1 CWM145–P3613-190 18 3.21 −0.414** 2.45 0.429* 5.27
QTgwg.cgb-5B P4138-238–P5166-275 20 3.55 −0.551** 4.35
QTgwg.cgb-6A.1 Xgwm334–WMC297 1 3.01 0.508** 3.69
QTgwg.cgb-7A WMC488–P2071-180 0 4.89 0.345** 1.70 −0.461** 6.08
TGWM QTgwm.cgb-2D.1 P5874-138–WMC41 20 6.98 1.505** 5.48
QTgwm.cgb-3A.1 P3614-280–EST47 1 7.43 1.138** 4.20 1.010** 4.94
QTgwm.cgb-3A.2 CWM48.1–WMC532 10 6.72 1.630** 6.43
QTgwm.cgb-3A.3 Xgwm391–P8422-170 1 3.08 −0.973** 2.29
QTgwm.cgb-3B.1 P3622-400–P2076-147 6 2.72 −1.107** 2.97
QTgwm.cgb-6A.1 CWM306–Xpsp3071 8 3.28 0.856** 1.77 0.965** 4.51
QTgwm.cgb-6A.2 P3465-460–P3526-130 14 8.32 −1.567** 5.94
GFEE QGfee.cgb-1B.1 WMC44–Xgwm259 10 2.96 1.628** 2.52
QGfee.cgb-2A1 WMC522–WMC453.2 2 9.62 2.682** 6.83 −2.071** 8.14
QGfee.cgb-2A-.2 WMC27.2–P5166-248 0 2.98 1.787** 3.03
QGfee.cgb-4B Xgwm107–Xgwm513 0 10.63 2.358** 5.28 −2.249** 9.60
QGfee.cgb-5A.1 Xgwm156–Xgwm415 4 5.77 1.763** 2.95 −3.199** 19.43
QGfee.cgb-5A.2 Xgwm205.1–Xgwm443 8 4.35 −2.456** 5.73 2.047** 7.96
QGfee.cgb-6A Xgwm334–WMC297 1 2.92 1.452** 2.00
QGfee.cgb-6B P3470-210–WMC269.3 21 3.27 1.373** 1.79
QGfee.cgb-7B.1 WMC269.4–P3446-380 5 3.67 −1.676** 2.67
GFEL QGfel.cgb-1B.1 WMC44–Xgwm259 10 2.96 −1.628** 2.52
QGfel.cgb-2A.1 WMC522–WMC453.2 2 9.62 −2.682** 6.83 2.071** 8.14
QGfel.cgb-2A.2 WMC27.2–P5166-248 0 2.98 −1.787** 3.03
QGfel.cgb-4B Xgwm107–Xgwm513 0 10.63 −2.358** 5.28 2.249** 9.60
QGfel.cgb-5A.1 Xgwm156–Xgwm415 4 5.77 −1.763** 2.95 3.199** 19.43
QGfel.cgb-5A.2 Xgwm205.1–Xgwm443 8 4.35 2.456** 5.73 −2.047** 7.96
QGfel.cgb-6A Xgwm334–WMC297 1 2.92 −1.452** 2.00
QGfel.cgb-6B P3470-210–WMC269.3 21 3.27 −1.373** 1.79
QGfel.cgb-7B.1 WMC269.4–P3446-380 5 3.67 1.676** 2.67
a

Genetic distance between the most likely position of the putative QTL and the left flanking marker in the marker interval.

b

A, the additive effect. A positive value indicates the Hanxuan 10 allele having a positive effect on the trait, and a negative value represents the Lumai 14 allele having positive effect; *P = 0.005 and **P = 0.001; H2(A) (%) indicates the proportion of phenotypic variance explained by additive QTL.

c

E1, the DS environment; AE1, the additive QTL × environment interaction in DS; the absolute interaction effect value of additive QTL × environment in the WW environment is the same as in the DS environment, but the effect origin is reversed; H2(AE1) (%) indicates the phenotypic variance explained by additive QTL × environment interaction.