TABLE 3.
Additive and interacting effects of QTL × environment of identified QTL for the traits associated with SWSC and TWG
Trait | QTL | Flanking marker | Sitea (cM) | LOD | Ab | H2(A) (%)b | AE1c | H2(AE1) (%)c |
---|---|---|---|---|---|---|---|---|
SWSCF | QSwscf.cgb-1A.1 | WMC59–WMC254 | 10 | 10.26 | −0.456** | 4.34 | 0.526** | 11.55 |
QSwscf.cgb-1D.1 | WMC432–WMC222 | 0 | 3.72 | 0.299** | 1.87 | 0.336* | 4.71 | |
QSwscf.cgb-2D.1 | WMC453.1–WMC18 | 0 | 7.77 | −0.404** | 3.41 | −0.421** | 7.40 | |
QSwscf.cgb-2D.2 | WMC41–WMC170 | 0 | 3.11 | 0.225* | 1.06 | |||
QSwscf.cgb-4A | WMC420–Xgwm601 | 3 | 5.44 | −0.338** | 2.39 | 0.305* | 3.88 | |
QSwscf.cgb-4B.1 | Xgwm368–Xgwm107 | 15 | 4.93 | −0.459** | 8.80 | |||
QSwscf.cgb-7B.1 | CWM467–CWM466 | 0 | 7.52 | −0.436** | 3.97 | −0.387** | 6.25 | |
QSwscf.cgb-7D | Xgdm88–WMC463 | 0 | 3.41 | 0.354** | 2.62 | |||
SWSCG | QSwscg.cgb-4A | Xgwm610–Xgwm397 | 4 | 5.29 | −0.703** | 5.60 | 0.739* | 10.50 |
SWSCM | QSwscm.cgb-1A.1 | CWM516–CWM517 | 0 | 4.09 | −0.240** | 7.53 | ||
QSwscm.cgb-6B.1 | Xgwm219–WMC341 | 0 | 3.18 | −0.138* | 2.49 | 0.218* | 12.43 | |
AESWC | QAeswc.cgb-1A.1 | P3156-250–WMC59 | 0 | 4.01 | 2.965** | 7.73 | ||
QAeswc.cgb-2A.1 | Xgwm372–Xgwm448 | 0 | 4.76 | −4.080** | 7.32 | 3.306** | 9.61 | |
QAeswc.cgb-3B.1 | P3622-400–P2076-147 | 4 | 4.41 | −3.251** | 4.65 | |||
QAeswc.cgb-5A | P2470-280–Xgwm154 | 0 | 5.89 | −2.509** | 2.77 | 3.770** | 12.50 | |
QAeswc.cgb-7B.1 | WMC311–CWM467 | 2 | 5.13 | 2.059** | 1.86 | 2.416* | 5.13 | |
QAeswc.cgb-7D.1 | WMC436–Xgwm44 | 9 | 5.16 | 3.405** | 5.10 | |||
RESWC | QReswc.cgb-1A | Xgwm135–CWM516 | 4 | 4.18 | 1.758** | 6.24 | ||
QReswc.cgb-3B | Xgwm547–Xgwm181 | 1 | 3.14 | −1.357** | 3.72 | |||
QReswc.cgb-7A.1 | P2071-180–Xgwm260 | 3 | 4.45 | 1.858** | 6.97 | −1.798** | 13.05 | |
TGWG | QTgwg.cgb-2A.1 | P2478-160–WMC27.2 | 16 | 4.48 | 0.602** | 5.19 | ||
QTgwg.cgb-4A.1 | CWM145–P3613-190 | 18 | 3.21 | −0.414** | 2.45 | 0.429* | 5.27 | |
QTgwg.cgb-5B | P4138-238–P5166-275 | 20 | 3.55 | −0.551** | 4.35 | |||
QTgwg.cgb-6A.1 | Xgwm334–WMC297 | 1 | 3.01 | 0.508** | 3.69 | |||
QTgwg.cgb-7A | WMC488–P2071-180 | 0 | 4.89 | 0.345** | 1.70 | −0.461** | 6.08 | |
TGWM | QTgwm.cgb-2D.1 | P5874-138–WMC41 | 20 | 6.98 | 1.505** | 5.48 | ||
QTgwm.cgb-3A.1 | P3614-280–EST47 | 1 | 7.43 | 1.138** | 4.20 | 1.010** | 4.94 | |
QTgwm.cgb-3A.2 | CWM48.1–WMC532 | 10 | 6.72 | 1.630** | 6.43 | |||
QTgwm.cgb-3A.3 | Xgwm391–P8422-170 | 1 | 3.08 | −0.973** | 2.29 | |||
QTgwm.cgb-3B.1 | P3622-400–P2076-147 | 6 | 2.72 | −1.107** | 2.97 | |||
QTgwm.cgb-6A.1 | CWM306–Xpsp3071 | 8 | 3.28 | 0.856** | 1.77 | 0.965** | 4.51 | |
QTgwm.cgb-6A.2 | P3465-460–P3526-130 | 14 | 8.32 | −1.567** | 5.94 | |||
GFEE | QGfee.cgb-1B.1 | WMC44–Xgwm259 | 10 | 2.96 | 1.628** | 2.52 | ||
QGfee.cgb-2A1 | WMC522–WMC453.2 | 2 | 9.62 | 2.682** | 6.83 | −2.071** | 8.14 | |
QGfee.cgb-2A-.2 | WMC27.2–P5166-248 | 0 | 2.98 | 1.787** | 3.03 | |||
QGfee.cgb-4B | Xgwm107–Xgwm513 | 0 | 10.63 | 2.358** | 5.28 | −2.249** | 9.60 | |
QGfee.cgb-5A.1 | Xgwm156–Xgwm415 | 4 | 5.77 | 1.763** | 2.95 | −3.199** | 19.43 | |
QGfee.cgb-5A.2 | Xgwm205.1–Xgwm443 | 8 | 4.35 | −2.456** | 5.73 | 2.047** | 7.96 | |
QGfee.cgb-6A | Xgwm334–WMC297 | 1 | 2.92 | 1.452** | 2.00 | |||
QGfee.cgb-6B | P3470-210–WMC269.3 | 21 | 3.27 | 1.373** | 1.79 | |||
QGfee.cgb-7B.1 | WMC269.4–P3446-380 | 5 | 3.67 | −1.676** | 2.67 | |||
GFEL | QGfel.cgb-1B.1 | WMC44–Xgwm259 | 10 | 2.96 | −1.628** | 2.52 | ||
QGfel.cgb-2A.1 | WMC522–WMC453.2 | 2 | 9.62 | −2.682** | 6.83 | 2.071** | 8.14 | |
QGfel.cgb-2A.2 | WMC27.2–P5166-248 | 0 | 2.98 | −1.787** | 3.03 | |||
QGfel.cgb-4B | Xgwm107–Xgwm513 | 0 | 10.63 | −2.358** | 5.28 | 2.249** | 9.60 | |
QGfel.cgb-5A.1 | Xgwm156–Xgwm415 | 4 | 5.77 | −1.763** | 2.95 | 3.199** | 19.43 | |
QGfel.cgb-5A.2 | Xgwm205.1–Xgwm443 | 8 | 4.35 | 2.456** | 5.73 | −2.047** | 7.96 | |
QGfel.cgb-6A | Xgwm334–WMC297 | 1 | 2.92 | −1.452** | 2.00 | |||
QGfel.cgb-6B | P3470-210–WMC269.3 | 21 | 3.27 | −1.373** | 1.79 | |||
QGfel.cgb-7B.1 | WMC269.4–P3446-380 | 5 | 3.67 | 1.676** | 2.67 |
Genetic distance between the most likely position of the putative QTL and the left flanking marker in the marker interval.
A, the additive effect. A positive value indicates the Hanxuan 10 allele having a positive effect on the trait, and a negative value represents the Lumai 14 allele having positive effect; *P = 0.005 and **P = 0.001; H2(A) (%) indicates the proportion of phenotypic variance explained by additive QTL.
E1, the DS environment; AE1, the additive QTL × environment interaction in DS; the absolute interaction effect value of additive QTL × environment in the WW environment is the same as in the DS environment, but the effect origin is reversed; H2(AE1) (%) indicates the phenotypic variance explained by additive QTL × environment interaction.