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. 2007 May;176(1):571–584. doi: 10.1534/genetics.106.068361

TABLE 4.

Epistatic effects and interacting effects of epistatic QTL × environment of identified QTL for the traits associated with SWSC and TWG

Trait QTLia Flanking marker Site (cM)b QTLja Flanking marker Site(cM)b LOD AAc H2(AA) (%)c AAE1d H2(AAE1) (%)d
SWSCF QSwscf.cgb-1A.2 P5522-280–P6934-90 0 QSwscf.cgb-6B WMC417.2–P4232-550 14 6.23 −0.501** 2.97
QSwscf.cgb-1B.1 Xgwm131–WMC156 0 QSwscf.cgb-1B.2 P1142-430–P3470-180 2 4.85 −0.387** 1.77 0.368* 3.21
QSwscf.cgb-1B.3 CWM90–EST49 0 QSwscf.cgb-3A.1 WMC388–WMC21 0 4.55 −0.281** 0.94
QSwscf.cgb-2B P4233-160–CWM529 2 QSwscf.cgb-5A.1 Xgwm410–WMC340 7 2.97 −0.383** 1.73
QSwscf.cgb-2D.2 WMC41–WMC170 0 QSwscf.cgb-2D.3 WMC181–P3470-220 8 3.73 −0.266** 0.84
QSwscf.cgb-3A.2 WMC21–WMC505.2 0 QSwscf.cgb-5A.2 P2470-280–Xgwm154 0 2.91 −0.303** 1.09
QSwscf.cgb-3B CWM539.1–WMC236 0 QSwscf.cgb-7B.2 P1123-235–Xgwm611 5 2.74 −0.273** 0.88
QSwscf.cgb-3D WMC437–WMC529.1 15 QSwscf.cgb-5B Xgwm371–Xgwm335 3 3.85 0.471** 2.63
QSwscf.cgb-7B.1 CWM467–CWM466 0 QSwscf.cgb-7B.3 Xgwm611–Xgwm302 6 4.86 −0.452** 2.42
SWSCG QSwscg.cgb-1B Xgwm268–WMC44 22 QSwscg.cgb-7A.1 Xgwm635.2–Xgwm635.1 0 4.21 0.667** 1.78
QSwscg.cgb-1D CWM1–WMC432 0 QSwscg.cgb-3B P3716-150–Xgwm644.2 0 4.58 0.707** 2.00 −0.703* 3.95
QSwscg.cgb-2A.1 P1138-490–WMC264.2 1 QSwscg.cgb-6A.1 P3465-460–P3526-130 18 2.78 −0.749** 2.24
QSwscg.cgb-2A.2 P3613-170–CWM276 0 QSwscg.cgb-7A.2 WMC301–WMC9 15 3.86 −0.708* 4.01
QSwscg.cgb-2B WMC441–WMC344 5 QSwscg.cgb-6B WMC182–Xgwm644.1 0 7.07 1.184** 5.61 −1.060** 8.99
QSwscg.cgb-3B Xgwm547–Xgwm181 0 QSwscg.cgb-7A.3 P3156-360–WMC83 0 3.78 0.785** 2.46
QSwscg.cgb-6A.2 EST25–CWM88 0 QSwscg.cgb-7A.4 CWM48.2–CWM462.1 0 9.13 −0.901** 3.25 1.022** 8.36
SWSCM QSwscm.cgb-1A.2 WMC20–WMC93 3 QSwscm.cgb-4A CWM145–P3613-190 18 4.95 0.243** 4.71
QSwscm.cgb-1B.1 P4133-170–Xgwm582 4 QSwscm.cgb-1B.2 WMC156–P3446-183 0 4.88 0.144* 1.65
QSwscm.cgb-2A.1 Xgwm68.2–Xgwm71.1 0 QSwscm.cgb-6D Xgwm325–WMC113 0 3.60 −0.197** 3.09
QSwscm.cgb-2A.2 Xpsp3088–WMC296 5 QSwscm.cgb-5A.2 Xgwm595–WMC410 0 4.08 −0.207** 3.42
QSwscm.cgb-2B.1 P4233-160–CWM529 0 QSwscm.cgb-4B WMC47–P3459-220 42 3.88 −0.199** 3.16
QSwscm.cgb-2B.2 P3470-245–Xgwm429 5 QSwscm.cgb-3B.2 P2449-185–WMC231 19 3.86 −0.138* 1.52 0.214* 7.30
QSwscm.cgb-3B.1 P3156-185–P5138-100 6 QSwscm.cgb-5B Xgwm67–Xgwm213 0 6.58 −0.219** 3.82
QSwscm.cgb-5A.1 P3616-185–P3616-195 10 QSwscm.cgb-7B Xpsp3033–Xgwm297 8 3.43 0.245** 4.79
QSwscm.cgb-6B.1 Xgwm219–WMC341 0 QSwscm.cgb-6B.2 P3470-210–WMC269.3 9 5.39 −0.187** 2.79
AESWC QAeswc.cgb-1A.1 P3156-250–WMC59 0 QAeswc.cgb-1A.2 WMC385–P8222-250 0 7.74 2.016* 1.16
QAeswc.cgb-1A.2 P3156-250–WMC59 2 QAeswc.cgb-5D Xgdm43–Xgwm174 0 5.65 2.285** 1.49
QAeswc.cgb-2A.2 P3715-309–P1138-490 0 QAeswc.cgb-3B.2 P3716-150–Xgwm644.2 1 4.87 −2.789** 2.21 2.965* 5.00
QAeswc.cgb-3B.1 P3622-400–P2076-147 4 QAeswc.cgb-3B.3 WMC291–P3156-185 0 4.02 −2.128* 1.29
QAeswc.cgb-4A Xgwm265–WMC161 2 QAeswc.cgb-4B Xgwm107–Xgwm513 9 6.55 −2.468** 1.73 3.999** 9.10
QAeswc.cgb-5B.1 Xgwm371–Xgwm335 5 QAeswc.cgb-5B.2 P8143-349–P2454-195 1 4.08 −3.173** 2.86
QAeswc.cgb-5B.3 P5166-275–P8143-349 0 QAeswc.cgb-7A Xgwm635.2–Xgwm635.1 1 4.83 3.564** 7.23
QAeswc.cgb-6B P3516-205–P8966-195 3 QAeswc.cgb-7D.2 Xgwm44–Xgwm121 27 6.78 −3.367** 3.22 3.372** 6.47
QAeswc.cgb-7B.2 CWM467–CWM466 0 QAeswc.cgb-7B.3 Xgwm611–Xgwm302 26 3.47 2.510* 1.79
RESWC QReswc.cgb-2A.1 P5858-610–Xgwm328 0 QReswc.cgb-4A CWM145–P3613-190 0 3.56 −1.269** 3.95
QReswc.cgb-2A.2 WMC27.2–P5166-248 17 QReswc.cgb-2D P4233-175–P6411-410 25 3.47 −1.582** 6.13
QReswc.cgb-7A.1 P2071-180–Xgwm260 3 QReswc.cgb-7A.2 WMC301–WMC9 15 3.91 −1.157* 3.28
TGWG QTgwg.cgb-1B P3622-280–P3442-309 0 QTgwg.cgb-5A WMC524–Xgwm595 0 4.28 0.592** 5.16
QTgwg.cgb-2A.2 Xgwm122–CWM138.2 4 QTgwg.cgb-2B WMC474–Xgwm374 0 8.12 0.552** 4.49 −0.434* 5.55
QTgwg.cgb-3A.1 EST47–P3716-170 0 QTgwg.cgb-3A.2 WMC532–Xgwm369 1 3.13 −0.449** 2.97
QTgwg.cgb-4A.2 CWM145–P3613-190 9 QTgwg.cgb-4A.3 P4232-260–P2454-270 3 3.84 −0.749** 8.26
QTgwg.cgb-6A.2 Xgwm334–WMC297 0 QTgwg.cgb-6A.3 P3474-260–CWM162 2 5.81 −0.627** 5.79
QTgwg.cgb-6A.4 WMC179.1–WMC256 21 QTgwg.cgb-6A.4 P3465-460–P3526-130 4 3.82 0.588** 5.09
TGWM QTgwm.cgb-2A P3613-170–CWM276 5 QTgwm.cgb-3B.3 Xgwm299–CWM539.1 1 4.66 −1.488** 4.10
QTgwm.cgb-2B.1 P6411-216–P3470-245 0 QTgwm.cgb-7B.4 WMC276–Xgwm577 1 11.11 1.890** 6.61
QTgwm.cgb-2B.2 WMC344–WMC474 2 QTgwm.cgb-3B.4 Xgwm340–Xgwm247 2 8.37 −1.487** 4.09
QTgwm.cgb-2D.2 WMC181–P3470-220 0 QTgwm.cgb-7D Xgwm44–Xgwm121 7 7.44 1.457** 3.93
QTgwm.cgb-3A.1 P3614-280–EST47 0 QTgwm.cgb-7A.2 CWM462.2–Xgwm635.2 0 10.87 1.220** 2.75
QTgwm.cgb-3B.2 P2478-155–WMC505.1 0 QTgwm.cgb-7B.3 Xgwm297–Xgwm68.1 16 6.40 −1.319** 3.22
QTgwm.cgb-3B.1 P3622-400–P2076-147 0 QTgwm.cgb-4A.1 P3446-205–CWM145 1 6.45 1.071** 2.12
QTgwm.cgb-4A.2 P5611-136–P4232-260 4 QTgwm.cgb-7B.2 WMC526–WMC273 2 4.25 −1.117** 2.31
QTgwm.cgb-4D Xgwm192–WMC331 24 QTgwm.cgb-7B.1 P6401-238–WMC269.4 25 4.07 −0.823** 1.25
QTgwm.cgb-6A.3 P4232-400–CWM306 33 QTgwm.cgb-7A.1 P3465-175–CWM48.2 7 6.08 −1.004** 1.86 −1.132** 4.74
QTgwm.cgb-6B.1 Xgwm219–WMC341 0 QTgwm.cgb-6B.2 P3470-210–WMC269.3 21 4.09 −0.805** 1.20
GFEE QGfee.cgb-1A Xpsp3027–Xgwm164 0 QGfef.cgb-2D.2 P5874-138–WMC41 6 3.00 1.720** 1.96
QGfee.cgb-1B.3 WMC269.2–CWM90 15 QGfef.cgb-1B.2 WMC44–Xgwm259 6 5.92 1.905** 2.41
QGfee.cgb-1D Xgdm33–P3470-527 4 QGfef.cgb-2D.1 Xgwm261–WMC112 0 7.93 −2.459** 4.01 1.924** 4.91
Qgfee.cgb-2A.3 P3613-170–CWM276 8 QGfef.cgb-7B.2 WMC311–CWM467 2 5.97 −1.978** 2.60 1.709* 3.88
QGfee.cgb-3B Xgwm72–Xgwm274 0 QGfef.cgb-7B.3 Xgwm297–Xgwm68.1 16 6.96 2.502** 4.15
GFEL QGfel.cgb-1A Xpsp3027–Xgwm164 0 QGfel.cgb-2D.2 P5874-138–WMC41 6 3.00 −1.720** 1.96
QGfel.cgb-1B.3 WMC269.2–CWM90 15 QGfel.cgb-1B.2 WMC44–Xgwm259 6 5.92 −1.905** 2.41
QGfel.cgb-1D Xgdm33–P3470-527 4 QGfel.cgb-2D.1 Xgwm261–WMC112 0 7.93 2.459** 4.01 −1.924** 4.91
QGfel.cgb-2A.3 P3613-170–CWM276 8 QGfel.cgb-7B.2 WMC311–CWM467 2 5.97 1.978** 2.60 −1.709* 3.88
QGfel.cgb-3B Xgwm72–Xgwm274 0 QGfel.cgb-7B.3 Xgwm297–Xgwm68.1 16 6.96 −2.502** 4.15
a

QTLi and QTLj are a pair of QTL detected by two-dimensional searching.

b

Genetic distance between the most likely position of the putative QTL and the left flanking marker in the marker interval.

c

AA, the direction of the epistatic effect: a positive value means that the parent-type effect is greater than the recombinant-type effect, and the negative value means that the parent-type effect is less than the recombinant-type effect; *P = 0.005 and **P = 0.001; H2(AA) (%) indicates the phenotypic variance explained by epistatic QTL.

d

E1, the DS environment; AAE1, the interaction effect of epistatic QTL × environment in the DS environment; the absolute effect value of QTL × environment interaction in the WW environment is the same as in the DS environment, but the effect origin is reversed; H2(AAE1) (%) indicates the phenotypic variance explained by an epistatic QTL × environment interaction.