TABLE 3.
Breakpoint-containing clones for inversion and translocation between O. punctata and O. sativa genomes
| Alignment
|
|||||||||
|---|---|---|---|---|---|---|---|---|---|
| Type | Clone | Contig | CB position | Chromosome | O. punctata BES | Start on O. sativa (bp) | End on O. sativa (bp) | e-Value | % identity |
| Inversion | a0073K20 | 111 | 1675–1820 | 8 | a0073K20f | 19517686 | 19518562 | 1.00E-215 | 95 |
| a0073K20r | 20703719 | 20704556 | 1.00E-162 | 93 | |||||
| a0078K10 | 112 | 770–911 | 8 | a0078K10f | 19667817 | 19668627 | 1.00E-182 | 96 | |
| a0078K10r | 20752956 | 20753518 | 1.00E-128 | 95 | |||||
| Transposition | a0092G08 | 75 | 760–896 | 6 | a0092G08f | 18450596 | 18451456 | 1.00E-118 | 93 |
| a0092G08r | 13002825 | 13004742 | 1.00E-156 | 94 | |||||
| a0090D18 | 76 | 12–176 | 6 | a0090D18f | 13174718 | 13175434 | 1.00E-182 | 94 | |
| a0090D18r | 18708349 | 18708663 | 1.00E-73 | 95 | |||||