TABLE 3.
Associations between three-marker haplotypes at male reproductive genes and sperm competition phenotypes
| Phenotype | Marker | Marker typea | Adjusted r2 | Other associationsb |
|---|---|---|---|---|
| Refractory | Acp70Asnp902:1412:1554 | ∼600 bp, ∼80 bp upstream, ser/ala (18) | 0.14 | None |
| P1′ | CG14560snp1173:1306:1474 | ∼325 bp, ∼200 bp, ∼30 bp upstream | 0.13 | Fec-def |
| Fecundity-defense | CG14560snp1042:1131:1173 | ∼450 bp, ∼370 bp, ∼325 bp upstream | 0.15 | None |
| CG14560snp1131:1173:1306 | ∼370 bp, ∼325 bp, ∼200 bp upstream | 0.14 | P1′, fec-V1 | |
| CG14560snp1173:1306:1474 | ∼325 bp, ∼200 bp, ∼30 bp upstream | 0.13 | P1′ | |
| Remating | EST6snp2090:2204:2348 | syn (197), syn (233), syn (283) | 0.14 | None |
| EST6snp2348:3072:3338 | syn (283), ser/ala (508), ∼150 bp downstream | 0.37c | Fec-off, fec-V2 | |
| P2′ | Acp62Fsnp1552:1822:2188 | syn (10), syn (100), intron | 0.16 | None |
| Acp62Fsnp1822:2188:2880 | syn (100), intron, intron | 0.14 | None | |
| Fecundity-offense | Mst57Dsnp2852:3073:3161 | ala/thr (56), ∼70 bp, ∼160 bp downstream | 0.14c | Fec-V2 |
| Fecundity-V2 | EST6snp2348:3072:3338 | syn (283), ser/ala (508), ∼150 bp downstream | 0.12c | Fec-off, remating |
| Mst57Dsnp2852:3073:3161 | ala/thr (56), ∼70 bp, ∼160 bp downstream | 0.12 | Fec-off |
a
Codon position for synonymous (syn) or nonsynonymous changes is given in parentheses.
b
Abbreviations for phenotypes: fec-off, fecundity-offense; fec-def, fecundity-defense; fec-V1, fecundity-V1; fec-V2, fecundity-V2.
c
Associations driven by a single haplotype of low phenotypic value are represented by a single line.