TABLE 1.
TE-derived human miRNAs
| miRNA name (from miRBase) | miRBase accession no. | Coordinatesa | Colocated TE | Overlapb | Average conservation score | Targetsc |
|---|---|---|---|---|---|---|
| hsa-mir-130b | MI0000748 | Chromosome 22: 20337593–20337674(+) | MIRm | 65.85 | 0.8492 | 865 (10.75) |
| hsa-mir-151 | MI0000809 | Chromosome 8: 141811845–141811934(−) | L2 | 100.00 | 0.9317 | 863 (12.28) |
| hsa-mir-28 | MI0000086 | Chromosome 3: 189889263–189889348(+) | L2 | 93.02 | 0.9979 | 1136 (10.21) |
| hsa-mir-325 | MI0000824 | Chromosome X: 76142220–76142317(−) | L2 | 89.80 | 0.9905 | 751 (13.32) |
| hsa-mir-330 | MI0000803 | Chromosome 19: 50834092–50834185(−) | MIRm | 53.19 | 0.9867 | 927 (5.18) |
| hsa-mir-345 | MI0000825 | Chromosome 14: 99843949–99844046(+) | MIR | 39.80 | 0.8265 | 895 (7.82) |
| hsa-mir-361 | MI0000760 | Chromosome X: 85045297–85045368(−) | MER5A | 81.94 | 0.9998 | 882 (14.51) |
| hsa-mir-370 | MI0000778 | Chromosome 14: 100447229–100447303(+) | MIRm | 100.00 | 0.9893 | 1006 (4.77) |
| hsa-mir-374 | MI0000782 | Chromosome X: 73423846–73423917(−) | L2 | 54.17 | 0.9970 | 773 (7.50) |
| hsa-mir-378 | MI0000786 | Chromosome 5: 149092581–149092646(+) | MIRb | 90.91 | 1.0000 | 0 (0) |
| hsa-mir-421 | MI0003685 | Chromosome X: 73354937–73355021(−) | L2 | 89.41 | 0.9999 | 1023 (14.47) |
| hsa-mir-422a | MI0001444 | Chromosome 15: 61950182–61950271(−) | MIR3 | 100.00 | 0.0018 | 940 (7.34) |
| hsa-mir-493 | MI0003132 | Chromosome 14: 100405150–100405238(+) | L2 | 66.29 | 0.9990 | 0 (0) |
| hsa-mir-513-1 | MI0003191 | Chromosome X: 146102673–146102801(−) | MER91C | 100.00 | 0.0543 | 1065 (7.14) |
| hsa-mir-513-2 | MI0003192 | Chromosome X: 146115036–146115162(−) | MER91C | 100.00 | 0.0003 | 1065 (7.14) |
| hsa-mir-544 | MI0003515 | Chromosome 14: 100584748–100584838(+) | MER5A1 | 100.00 | 0.9337 | 1056 (10.42) |
| hsa-mir-545 | MI0003516 | Chromosome X: 73423664–73423769(−) | L2 | 82.08 | 0.9958 | 1065 (16.345) |
| hsa-mir-548a-1 | MI0003593 | Chromosome 6: 18679994–18680090(+) | MADE1 | 78.35 | 0.0391 | 1255 (7.09) |
| hsa-mir-548a-2 | MI0003598 | Chromosome 6: 135601991–135602087(+) | LTR16A1, MADE1 | 100.00 | 0.0047 | 1255 (7.09) |
| hsa-mir-548a-3 | MI0003612 | Chromosome 8: 105565773–105565869(−) | MLT1G1, MADE1 | 100.00 | 0.0044 | 1255 (7.09) |
| hsa-mir-548b | MI0003596 | Chromosome 6: 119431911–119432007(−) | MADE1 | 83.51 | 0.0175 | 1197 (5.93) |
| hsa-mir-548c | MI0003630 | Chromosome 12: 63302556–63302652(+) | MADE1 | 83.51 | 0.0092 | 1302 (6.76) |
| hsa-mir-548d-1 | MI0003668 | Chromosome 8: 124429455–124429551(−) | MADE1 | 83.51 | 0.0076 | 1055 (10.24) |
| hsa-mir-548d-2 | MI0003671 | Chromosome 17: 62898067–62898163(−) | MADE1 | 83.51 | 0.0000 | 1055 (10.24) |
| hsa-mir-552 | MI0003557 | Chromosome 1: 34907787–34907882(−) | L1MD2 | 100.00 | 0.0000 | 1067 (11.62) |
| hsa-mir-558 | MI0003564 | Chromosome 2: 32610724–32610817(+) | MLT1C | 45.74 | 0.0112 | 778 (7.58) |
| hsa-mir-562 | MI0003568 | Chromosome 2: 232745607–232745701(+) | L1MB7 | 100.00 | 0.0019 | 954 (11.64) |
| hsa-mir-566 | MI0003572 | Chromosome 3: 50185763–50185856(+) | AluSg | 100.00 | 0.0000 | 1184 (80.07) |
| hsa-mir-570 | MI0003577 | Chromosome 3: 196911452–196911548(+) | MADE1 | 82.47 | 0.0000 | 1115 (4.22) |
| hsa-mir-571 | MI0003578 | Chromosome 4: 333946–334041(+) | L1MA9 | 96.88 | 0.0000 | 948 (8.33) |
| hsa-mir-575 | MI0003582 | Chromosome 4: 83893514–83893607(−) | MIR | 61.70 | 0.0001 | 1048 (7.35) |
| hsa-mir-576 | MI0003583 | Chromosome 4: 110629303–110629400(+) | L1MB7 | 100.00 | 0.0121 | 921 (10.53) |
| hsa-mir-578 | MI0003585 | Chromosome 4: 166526844–166526939(+) | L2 | 44.79 | 0.0064 | 1012 (7.61) |
| hsa-mir-579 | MI0003586 | Chromosome 5: 32430241–32430338(−) | MADE1, L1MB8 | 100.00 | 0.3543 | 1202 (6.32) |
| hsa-mir-582 | MI0003589 | Chromosome 5: 59035189–59035286(−) | L3, L3 | 85.71 | 0.9954 | 1017 (8.06) |
| hsa-mir-584 | MI0003591 | Chromosome 5: 148422069–148422165(−) | MER81 | 92.78 | 0.0008 | 794 (10.96) |
| hsa-mir-587 | MI0003595 | Chromosome 6: 107338693–107338788(+) | MER115 | 100.00 | 0.0053 | 970 (6.39) |
| hsa-mir-588 | MI0003597 | Chromosome 6: 126847470–126847552(+) | L1MA3 | 100.00 | 0.0000 | 873 (10.77) |
| hsa-mir-603 | MI0003616 | Chromosome 10: 24604620–24604716(+) | MADE1 | 84.54 | 0.0102 | 1008 (7.44) |
| hsa-mir-606 | MI0003619 | Chromosome 10: 76982222–76982317(+) | L1MCc | 100.00 | 0.0014 | 776 (8.38) |
| hsa-mir-607 | MI0003620 | Chromosome 10: 98578416–98578511(−) | MIR | 100.00 | 0.9990 | 985 (8.83) |
| hsa-mir-616 | MI0003629 | Chromosome 12: 56199213–56199309(−) | L2 | 100.00 | 0.0004 | 922 (10.30) |
| hsa-mir-619 | MI0003633 | Chromosome 12: 107754813–107754911(−) | L1MC4, AluSx | 100.00 | 0.0008 | 765 (8.89) |
| hsa-mir-625 | MI0003639 | Chromosome 14: 65007573–65007657(+) | L1MCa | 100.00 | 0.0018 | 1065 (4.41) |
| hsa-mir-626 | MI0003640 | Chromosome 15: 39771075–39771168(+) | L1MB8, L1MCa | 56.38 | 0.0086 | 1022 (6.65) |
| hsa-mir-633 | MI0003648 | Chromosome 17: 58375308–58375405(+) | MIRb | 100.00 | 0.0136 | 843 (7.12) |
| hsa-mir-634 | MI0003649 | Chromosome 17: 62213652–62213748(+) | L1ME3A | 48.45 | 0.0019 | 886 (5.08) |
| hsa-mir-640 | MI0003655 | Chromosome 19: 19406872–19406967(+) | MIRb | 100.00 | 0.0074 | 853 (28.49) |
| hsa-mir-644 | MI0003659 | Chromosome 20: 32517791–32517884(+) | L1MB3 | 61.70 | 0.1035 | 970 (4.95) |
| hsa-mir-645 | MI0003660 | Chromosome 20: 48635730–48635823(+) | MER1B | 62.77 | 0.0002 | 682 (13.49) |
| hsa-mir-648 | MI0003663 | Chromosome 22: 16843634–16843727(−) | L2 | 98.94 | 0.0008 | 943 (6.15) |
| hsa-mir-649 | MI0003664 | Chromosome 22: 19718465–19718561(−) | L1M4, MER8, AluSx | 100.00 | 0.0005 | 1033 (10.65) |
| hsa-mir-652 | MI0003667 | Chromosome X: 109185213–109185310(+) | MER91C | 100.00 | 0.9883 | 803 (39.36) |
| hsa-mir-659 | MI0003683 | Chromosome 22: 36573631–36573727(−) | Arthur1 | 46.39 | 0.0027 | 890 (8.20) |
| hsa-mir-95 | MI0000097 | Chromosome 4: 8057928–8058008(−) | L2 | 95.06 | 0.9862 | 847 (16.06) |
a
Human genome (hg 18) coordinates of the miRNA.
b
Percentage of miRNA overlapping with TE sequence.
c
Total number of targets with the percentage derived from TEs in parentheses.