TABLE 4.
Predicted TE-derived miRNA genes
| Namea | Coordinatesb | Colocated TE | Expression datac |
|---|---|---|---|
| 3715_0_+_61 | Chromosome 1: 3131597–3131629(+) | MER121 | EST/mRNA/KG/RS |
| 15086_0_−_78 | Chromosome 1: 15041842–15041859(−) | HAL1 | EST/mRNA/KG/RS |
| 25288_0_−_83 | Chromosome 1: 23621848–23621877(−) | MIRb | EST/mRNA/KG/RS |
| 30647_0_+_38 | Chromosome 1: 27752374–27752433(+) | MIRb | EST/mRNA/KG/RS |
| 52664_0_−_50 | Chromosome 1: 44571346–44571464(−) | Eulor9A | EST/mRNA/KG/RS |
| 67626_0_−_76 | Chromosome 1: 57127400–57127465(−) | Eulor1 | EST/mRNA/KG/RS |
| 85615_0_+_83 | Chromosome 1: 76474930–76474947(+) | MIRb | EST/mRNA/KG/RS |
| 120809_0_+_79 | Chromosome 1: 111021701–111021719(+) | MIR | EST/mRNA |
| 122080_0_−_62 | Chromosome 1: 112177611–112177631(−) | MIR | EST/mRNA/KG/RS |
| 124780_0_−_66 | Chromosome 1: 114214379–114214407(−) | MIRb | EST/mRNA/KG/RS |
| 154818_0_−_64 | Chromosome 1: 162825371–162825437(−) | MER135 | EST/mRNA/KG/RS |
| 188052_1_−_92 | Chromosome 1: 198460508–198460590(−) | Eulor3 | — |
| 204532_0_−_104 | Chromosome 1: 211522027–211522054(−) | UCON31 | EST |
| 230542_0_−_67 | Chromosome 1: 244286075–244286098(−) | L1MB3 | EST/mRNA/KG/RS |
| 1231553_0_+_75 | Chromosome 2: 67238894–67239028(+) | Eulor4 | EST/mRNA |
| 1258257_0_+_85 | Chromosome 2: 104314401–104314489(+) | MER134 | — |
| 1361323_0_+_57 | Chromosome 2: 213067475–213067509(+) | Eulor5A | EST/mRNA/KG/RS |
| 1573547_0_+_44 | Chromosome 3: 61643441–61643518(+) | MER126 | EST/mRNA/KG/RS |
| 1573643_0_+_95 | Chromosome 3: 61718341–61718381(+) | MER134 | EST/mRNA/KG/RS |
| 1620066_0_−_64 | Chromosome 3: 116298434–116298458(−) | Eulor1 | EST/mRNA/KG/RS |
| 1651767_0_+_52 | Chromosome 3: 146074810–146074873(+) | Eulor3 | — |
| 1668216_0_−_58 | Chromosome 3: 168436231–168436447(−) | MER126 | — |
| 1730972_0_−_56 | Chromosome 4: 46681709–46681733(−) | L1ME3B | EST/mRNA/KG/RS |
| 1747758_0_−_63 | Chromosome 4: 74275595–74275629(−) | L1M5 | EST/mRNA/KG/RS |
| 1757379_0_+_70 | Chromosome 4: 85466757–85466855(+) | MER134 | — |
| 1827751_0_+_75 | Chromosome 4: 181988895–181988914(+) | MIRb | EST |
| 1830405_0_+_49 | Chromosome 4: 183690755–183690850(+) | MER135 | EST/mRNA/RS |
| 1873731_0_+_53 | Chromosome 5: 58495675–58495729(+) | UCON9 | EST/mRNA/KG/RS |
| 1902777_0_+_53 | Chromosome 5: 90643387–90643420(+) | AmnSINE1_GG | EST/mRNA |
| 1920501_0_+_72 | Chromosome 5: 113735156–113735173(+) | L2 | EST/mRNA/KG/RS |
| 1966281_0_+_83 | Chromosome 5: 156681824–156681841(+) | MIR3 | EST/mRNA/KG/RS |
| 1975838_0_−_80 | Chromosome 5: 165688874–165688944(−) | Eulor5A | — |
| 1979031_0_+_61 | Chromosome 5: 167506770–167506888(+) | Eulor9A | EST/mRNA/RS |
| 1987527_0_+_59 | Chromosome 5: 175727565–175727628(+) | L2 | EST/mRNA/KG/RS |
| 2000476_0_−_85 | Chromosome 6: 8499794–8499914(−) | Eulor6C | EST/mRNA |
| 2031067_0_+_44 | Chromosome 6: 39048083–39048162(+) | Eulor5A | EST/mRNA/KG/RS |
| 2075048_0_−_91 | Chromosome 6: 94484941–94484963(−) | ERVL-E | EST/mRNA |
| 2115069.5_0_+_82 | Chromosome 6: 141179709–141179763(+) | Eulor5B | — |
| 2165103_0_+_104 | Chromosome 7: 28447122–28447144(+) | MER121 | EST/mRNA/KG/RS |
| 2195049_0_+_117 | Chromosome 7: 73161289–73161306(+) | MIR3 | EST/mRNA/KG/RS |
| 2232211_0_+_45 | Chromosome 7: 113190696–113190791(+) | Eulor6B | — |
| 2247695_1_+_65 | Chromosome 7: 129521966–129521985(+) | L1ME4a | EST/mRNA/KG/RS |
| 2265159_0_+_85 | Chromosome 7: 146833245–146833271(+) | UCON4 | EST/mRNA/KG/RS |
| 2330918_0_−_108 | Chromosome 8: 79081399–79081462(-) | Eulor3 | — |
| 2344217_0_+_65 | Chromosome 8: 97188471–97188580(+) | MER135 | EST |
| 2348773_0_+_51 | Chromosome 8: 102229956–102230022(+) | Charlie9 | — |
| 2401146_0_−_96 | Chromosome 9: 16787222–16787246(−) | MIR | EST/mRNA/KG/RS |
| 2421368_0_−_79 | Chromosome 9: 37811135–37811158(−) | L1MC4a | EST/mRNA/KG/RS |
| 2426661_0_+_64 | Chromosome 9: 70297285–70297306(+) | MER91A | EST/KG/RS |
| 2455634_0_−_64 | Chromosome 9: 105918396–105918420(−) | MER5A | EST/mRNA/KG/RS |
| 2469999_0_+_79 | Chromosome 9: 118715772–118715795(+) | UCON11 | EST/mRNA/KG/RS |
| 2500550_0_−_83 | Chromosome X: 10899595–10899617(−) | L4 | EST/mRNA/KG/RS |
| 2519737_0_+_67 | Chromosome X: 24557155–24557175(+) | L1ME4a | EST/mRNA/KG/RS |
| 2598753_0_+_171 | Chromosome X: 123865376–123865447(+) | Eulor11 | EST/mRNA/KG/RS |
| 2607024_0_−_68 | Chromosome X: 131689852–131689873(−) | L1MB5 | EST/mRNA/KG/RS |
| 2625375_0_+_86 | Chromosome X: 152562536–152562556(+) | L2 | EST/mRNA/KG/RS |
| 276291_0_+_66 | Chromosome 10: 62836157–62836220(+) | L1M5 | — |
| 285555_0_+_63 | Chromosome 10: 72980870–72980944(+) | MER125 | EST/mRNA/KG/RS |
| 334961_0_+_78 | Chromosome 10: 117579937–117579954(+) | L2 | EST/mRNA/KG/RS |
| 335779_0_+_54 | Chromosome 10: 118027456–118027512(+) | Eulor6D | EST |
| 377681_0_+_96 | Chromosome 11: 19331037–19331062(+) | L3 | mRNA/KG |
| 425555_0_+_71 | Chromosome 11: 71985685–71985701(+) | MIR | EST/mRNA/KG/RS |
| 438439_0_+_83 | Chromosome 11: 83316376–83316398(+) | L2 | EST/mRNA/KG/RS |
| 486187_0_+_68 | Chromosome 11: 130861130–130861151(+) | MIRb | EST/mRNA/KG/RS |
| 487071_2_+_103 | Chromosome 11: 131453921–131453949(+) | MER122 | EST/mRNA/KG/RS |
| 492576_0_−_95 | Chromosome 12: 2125422–2125443(−) | MIRb | mRNA/KG/RS |
| 533638.0_0_−_122 | Chromosome 12: 50492331–50492353(−) | MIRb | mRNA/KG |
| 542148_0_−_83 | Chromosome 12: 55246557–55246574(−) | LTR37B | EST/mRNA/KG/RS |
| 551096_0_−_85 | Chromosome 12: 64538090–64538148(−) | Eulor5A | EST/mRNA/KG/RS |
| 596947_0_+_93 | Chromosome 12: 115505370–115505426(+) | MER123 | EST/mRNA |
| 697653_0_+_69 | Chromosome 14: 33093444–33093479(+) | UCON11 | EST/mRNA/KG/RS |
| 700890_0_−_65 | Chromosome 14: 35855217–35855366(−) | Eulor6A | EST/mRNA/KG/RS |
| 775713_0_+_77 | Chromosome 15: 25703141–25703162(+) | L1MCc | EST/mRNA/KG/RS |
| 787092_0_−_65 | Chromosome 15: 35993736–35993832(−) | Eulor5A | — |
| 896537_0_+_81 | Chromosome 16: 30749660–30749680(+) | MIR | EST |
| 928869_0_+_74 | Chromosome 16: 70304015–70304037(+) | MIR3 | EST/mRNA/KG/RS |
| 976169_0_+_86 | Chromosome 17: 24040248–24040268(+) | L1ME4a | EST/mRNA/KG/RS |
| 989909_0_+_100 | Chromosome 17: 34009010–34009024(+) | MIR3 | EST/mRNA/KG/RS |
| 1000039.8_0_+_109 | Chromosome 17: 39468501–39468532(+) | L1MC4 | EST/mRNA/KG/RS |
| 1077028_0_−_58 | Chromosome 18: 33875730–33875789(−) | MIRb | — |
| 1105916_0_−_78 | Chromosome 18: 71369451–71369514(−) | UCON11 | — |
| 1435354_0_−_79 | Chromosome 20: 44235903–44235921(−) | MIR | EST/mRNA/KG/RS |
| 1443968_0_−_61 | Chromosome 20: 53838763–53838824(−) | UCON29 | — |
| 1466070_0_−_70 | Chromosome 21: 33853177–33853203(−) | L2 | EST/mRNA |
| 1496941_0_+_79 | Chromosome 22: 35289947–35289989(+) | L1MC4 | EST |
a
Name of the EvoFold locus from the hg18 UCSC Genome Browser annotation. The last field in the name corresponds to the EvoFold score.
b
Genome coordinates and strand of the EvoFold locus.
c
Source of the expression data for the locus: KG, UCSC Genome Browser known gene annotation; RS, NCBI RefSeq annotation.