Table 2.
Summary of the side chain contacts within 4.2 Å for nonpolar side chains and the aliphatic component of polar side chains in the three αTS hydrophobic clustersa
ILV | ACFILMPVY | ALLb | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
# contacts | # residues | # contacts/ residue |
# contacts | # residues | # contacts/ residue |
# contacts | # residues | # contacts/ residue |
||
Cluster 1 | 14 | 8 | 1.8 | 42 | 12 | 3.5 | 48 | 13 | 3.7 | |
Cluster 2 | 90 | 31 | 2.9 | 182 | 57 | 3.2 | 287 | 100 | 2.9 | |
Cluster 3 | 20 | 12 | 1.7 | 85 | 35 | 2.4 | 144 | 52 | 2.8 | |
| ||||||||||
Total | 124 | 51 | 2.4 | 309 | 104 | 3.0 | 479 | 165 | 2.9 |
As noted in the legend to Figure 1, the side chain contacts are calculated based on the coordinates of the α subunit of tryptophan synthase from S. typhimurium (1BKS63), which shares 85% sequence identity with E. coli αTS. ILV residues are largely conserved in E. coli, except the six I/V switches: V52I (β2), I148V (loop before β5), V166I (α5), I197V (α6), V224I (α7) and L245I (loop between α8' and α8).
All residues in the sequence except glycine.