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. Author manuscript; available in PMC: 2008 Mar 9.
Published in final edited form as: J Mol Biol. 2006 Dec 15;366(5):1624–1638. doi: 10.1016/j.jmb.2006.12.005

Table 2.

Summary of the side chain contacts within 4.2 Å for nonpolar side chains and the aliphatic component of polar side chains in the three αTS hydrophobic clustersa

ILV ACFILMPVY ALLb

# contacts # residues # contacts/
residue
# contacts # residues # contacts/
residue
# contacts # residues # contacts/
residue

Cluster 1 14 8 1.8 42 12 3.5 48 13 3.7
Cluster 2 90 31 2.9 182 57 3.2 287 100 2.9
Cluster 3 20 12 1.7 85 35 2.4 144 52 2.8

Total 124 51 2.4 309 104 3.0 479 165 2.9
a

As noted in the legend to Figure 1, the side chain contacts are calculated based on the coordinates of the α subunit of tryptophan synthase from S. typhimurium (1BKS63), which shares 85% sequence identity with E. coli αTS. ILV residues are largely conserved in E. coli, except the six I/V switches: V52I (β2), I148V (loop before β5), V166I (α5), I197V (α6), V224I (α7) and L245I (loop between α8' and α8).

b

All residues in the sequence except glycine.