Table 2.
Promoter motifs in different clusters
| Motif | Cluster No. | Distribution | P value | ||
| Name | Sequence | Genome | Cluster | ||
| WBBOXPCWRKY1 | TTTGACT | N0 | 8004/31128 | 301/699 | 2.06 × e-23 |
| ACGCG* | N0 | 6880/31128 | 230/699 | 3.40 × e-11 | |
| HSF | RGAAnnTTC | N0 | 8380/31128 | 260/699 | 1.95 × e-09 |
| ACGTABREMOTIFA2OSEM | ACGTGKC | N1 | 4552/31128 | 118/343 | 5.43 × e-20 |
| ABREATCONSENSUS | YACGTGGC | N1 | 1470/31128 | 56/343 | 8.08 × e-16 |
| IBOXCORENT | GATAAGR | N1 | 8237/31128 | 134/343 | 2.43 × e-07 |
| SORLIP2AT | GGGCC | N1 | 10199/31128 | 145/343 | 1.44 × e-04 |
| RACCACAR* | N1 | 4187/31128 | 74/343 | 2.47 × e-05 | |
| IBOXCORENT | GATAAGR | N2 | 8237/31128 | 414/1206 | 9.99 × e-10 |
| SORLIP2AT | GGGCC | N2 | 10199/31128 | 495/1206 | 1.06 × e-09 |
| UP1ATMSD | GGCCCAWWW | N2 | 4460/31128 | 242/1206 | 3.53 × e-08 |
| SORLIP5AT | GAGTGAG | N2 | 3015/31128 | 169/1206 | 9.47 × e-07 |
| ACGTABREMOTIFA2OSEM | ACGTGKC | N3 | 4552/31128 | 98/154 | 1.09 × e-43 |
| ABRELATERD1 | ACGTG | N3 | 16971/31128 | 139/154 | 4.99 × e-22 |
| BOXIIPCCHS | ACGTGGC | N3 | 2367/31128 | 51/154 | 5.97 × e-20 |
| ZDNAFORMINGATCAB1 | ATACGTGT | N3 | 771/31128 | 20/154 | 1.99 × e-09 |
| T/GBOXATPIN2 | AACGTG | N3 | 7495/31128 | 66/154 | 2.36 × e-07 |
| DRECRTCOREAT | RCCGAC | N3 | 7166/31128 | 62/154 | 1.37 × e-06 |
| SORLIP1AT | GCCAC | N3 | 15027/31128 | 101/154 | 1.11 × e-05 |
| UP1ATMSD | GGCCCAWWW | N5 | 4460/31128 | 167/705 | 2.79 × e-11 |
| RRCCGTTA* | N5 | 1809/31128 | 88/705 | 2.31 × e-11 | |
| E2F1OSPCNA | GCGGGAAA | N5 | 676/31128 | 33/705 | 4.69 × e-05 |
| E2FANTRNR | TTTCCCGC | N5 | 676/31128 | 33/705 | 4.69 × e-05 |
| E2FCONSENSUS | WTTSSCSS | N5 | 8895/31128 | 237/705 | 1.98 × e-06 |
| ACGTABREMOTIFA2OSEM | ACGTGKC | N8 | 4552/31128 | 32/89 | 5.09 × e-07 |
| RACCACAR* | N8 | 4187/31128 | 25/89 | 2.13 × e-04 | |
| DRECRTCOREAT | RCCGAC | N9 | 7166/31128 | 74/96 | 5.80 × e-29 |
| ACGTABREMOTIFA2OSEM | ACGTGKC | N9 | 4552/31128 | 45/96 | 5.55 × e-14 |
| ACGTABREMOTIFA2OSEM | ACGTGKC | N10 | 4552/31128 | 109/343 | 8.19 × e-16 |
| TGACGTVMAMY | TGACGT | N10 | 6796/31128 | 109/343 | 1.28 × e-05 |
| ABREATRD22 | RYACGTGGYR | N10 | 747/31128 | 22/343 | 3.28 × e-05 |
| ACGCG* | N11 | 6880/31128 | 122/279 | 7.90 × e-16 | |
| ACGTABREMOTIFA2OSEM | ACGTGKC | N12 | 4552/31128 | 67/197 | 8.52 × e-12 |
| DRECRTCOREAT | RCCGAC | N12 | 7166/31128 | 73/197 | 6.47 × e-06 |
| ELRECOREPCRP1 | TTGACC | N12 | 11015/31128 | 97/197 | 4.57 × e-05 |
| ACGTABREMOTIFA2OSEM | ACGTGKC | N13 | 4552/31128 | 77/149 | 2.96 × e-26 |
| ZDNAFORMINGATCAB1 | ATACGTGT | N13 | 771/31128 | 13/149 | 9.60 × e-05 |
| UP2ATMSD | AAACCCTA | N14 | 4947/31128 | 137/275 | 5.56 × e-39 |
| UP1ATMSD | GGCCCAWWW | N14 | 4460/31128 | 82/275 | 3.53 × e-11 |
| SITEIIATCYTC | TGGGCY | N14 | 12341/31128 | 164/275 | 1.79 × e-11 |
| MYCATERD1 | CATGTG | N15 | 11214/31128 | 89/171 | 1.36 × e-05 |
| SORLREP3AT | TGTATATAT | N15 | 3065/31128 | 33/171 | 1.34 × e-04 |
| UP1ATMSD | GGCCCAWWW | N18 | 4460/31128 | 193/430 | 2.38 × e-52 |
| E2FCONSENSUS | WTTSSCSS | N18 | 8895/31128 | 160/430 | 6.74 × e-05 |
| RnGTGGGC* | N18 | 2046/31128 | 51/430 | 3.92 × e-05 | |
| ELRECOREPCRP1 | TTGACC | N19 | 11015/31128 | 112/210 | 8.12 × e-08 |
| ACGTABREMOTIFA2OSEM | ACGTGKC | N20 | 4552/31128 | 43/91 | 1.40 × e-13 |
| LRENPCABE | ACGTGGCA | N20 | 1122/31128 | 12/91 | 1.07 × e-04 |
Motifs are according to the PLACE database [14]. *Motifs identified from a study in mammalian systems [89]. R, A or G; W, A or T; S, C or G; K, G or T; Y, C or T; n, any nucleotide.