Skip to main content
. 2007 Jan 19;93(2):442–455. doi: 10.1529/biophysj.106.086116

FIGURE 2.

FIGURE 2

Heavy-atom rmsf values calculated for the simulations of the schizophyllan monomer, of the nonperiodic schizophyllan fragment (system A), and of the periodic schizophyllan fragment (system B) at 273 K (light shaded, thick line), 350 K (dark shaded, normal line), or 450 K (solid, thin line) and displayed as a function of the atom sequence number (as defined in the OPLS-AA-SEI force field (48,51)). Vertical dashed lines indicate the boundaries of the lateral residues and vertical dotted lines the boundaries of the terminal glucose residues (system A only). The calculations are based on the entire 5-ns trajectories. For the schizophyllan fragments, the rmsf values are averaged over the equivalent atoms in the three chains.