Table 2.
Databases searched and classification information assigned by AutoFACT
| Database | Classification Information | Reference |
|---|---|---|
| European Ribosomal Database | Large subunit (LSU) ribosomal RNAs | (34) |
| Small subunit (SSU) ribosomal RNAs | ||
| Gene Ontology terms | (35,36) | |
| UniProt's UniRef 90 | Enzyme Commission numbers | |
| Locus names | ||
| Clusters of Orthologous Groups (COG) | Functional categories | (37,38) |
| Metabolic pathways | (39) | |
| Kyoto Encyclopedia of Genes and Genomes (KEGG) | Enzyme Commission numbers | |
| Locus names | ||
| Protein Families Database (Pfam) | Protein domains | (40) |
| NCBI's non-redundant database (nr) | N/A | (40) |
| NCBI's est_others database |