TABLE 1.
Primer sequences
| Primer | Sequencea |
|---|---|
| dock-In | ITCDATIGCITCDATRTTNCCITCRTTRTTNACITCICC |
| p41dir | GCNACNCCIACIGGIAARIGNITNAARGAYGTNCA |
| p41d1 | CTAACAATTATAAGGTTCATGGA |
| p41r1 | AAACTATTTTGTGAAGGTTCTAA |
| p41d2 | ACTAATTCGACTGAACTTCAAA |
| p41r2 | CACGTACATCCATCTCAGTTAT |
| pGH9d1 | GACAACGGTAAGCTTCTTTGGGGAGAGG |
| pGH9d2 | TTGAATACAAAAATGGCGTAGGTTCC |
| pGH9r2 | ACTCTGCCGGCATTATCTGTGTACCC |
| pGH9r3 | GATACTGCATCAAAGTCCGGCG |
| pGH9d4 | CAGGCAGGTCGTGATGAAAGTTAC |
| pGH9r4 | CTTACATCATCCCAGCAGTGCG |
| pGH9d5 | TGCCGGAAGCGAAACATTTTG |
| pGH9r5 | ATGTGTTTAAGAGTAGGACGTTG |
| p90dir | GGNACIGAITAIAAITAIGCIAARITNITNCAITA |
| p90d1 | GGCAGAATAAGAGTGTGCTTGACCC |
| p90r1 | TCCAGGTGTATTGGTTATTTTCGCC |
| p90d2 | TGTGTTTGTGACAACGGCGTTCTAG |
| p90r2 | GATGACTCCAGTCATCAGTCGGATTCCA |
| pMand1 | AACATACCCTTTCCCGTCAGACG |
| pManr1 | TGTAAGATGCCATCCGTACCAAGG |
| pMand2 | GCTGTACAGACTGCTATTCG |
| pManr2 | CTGAAAAGTACTGGAACACCT |
| p50dir | TNAAYAAYICNITNGGNITNACNCCICCIATGGG |
| p50d1 | GGATGCAAAGACATTTGCTTCATGGG |
| p50r1 | CAAGTTCCCATTGGAATCTCTTGCAGG |
| p50d2 | GACCAGCGGAGGCAATATTGAGATTAG |
| p50r2 | TATGAGCCCGTAAAACTGCCTTTGTCAG |
| p50d5 | CGTATACTTGTTCCGGCTGGG |
| p50r5 | GAGGCAATTGTACCCGCACC |
| p50d12 | CACTAAGTCCGACCCGACAG |
| p50r12 | GGTATGGCCTTGAATCAGGG |
| p59d6 | GATCTGGCAAGCGGCTATTAC |
| p59r6 | TGATAGAGATGTTATGCCATGCA |
| p59d7 | ATGTGGATTTCGGCGATGG |
| p59r7 | CCACATCCTCTCCGCCTTC |
a
In degenerate primers, I = inosine, Y = C or T, N = A, G, C, or T, R = A or G, and D = G, A, or T.