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T-COFFEE sequence alignments of the HCV IRES and the AEV 5′ UTR (A), the DHV-1 and DPV 5′ UTRs (B), and the PEV-8 and SPV-9 sequences, including the 5′ UTRs and adjacent coding regions (C); identical nucleotides are in uppercase and marked with asterisks. Sequences were annotated after alignment to show the boundaries of predicted structural elements.
