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. 2007 Apr 25;35(10):3330–3338. doi: 10.1093/nar/gkl1135

Figure 2.

Figure 2.

Representation of the energy (black), and RMSd with respect to A (in red) and B (in blue), when a relaxed DNA structure is perturbed along its first essential mode. RMSds were computed with reference to the MD-averaged A and B-conformations. Blue line is not smooth because perturbation along first essential mode is made using MD-averaged B-conformation.