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. 2007 Apr 25;35(10):3287–3296. doi: 10.1093/nar/gkm202

Table 2.

Sequences and masses of fragments produced by RNase T1 digestion

3′-Phosphate 2′,3′-Cyclic phosphate


Entry numbera Sequence (5′→3′) Peak Calculated mass Observed mass Peak Calculated mass Observed mass
1 UG A 670.4 N.I.b A′ 652.4 N.I.
2 CUCG B 1280.8 1280.9 B′ 1262.8 1262.9
3 CUCAG C 1610.0 1610.2 C′ 1592.0 N.D.c
4 CUG D 975.6 975.6 D′ 957.6 957.6
5 AUCUG E 1611.0 1611.2 E′ 1593.0 1593.2
6 CUUAG E 1611.0 1611.2 E′ 1593.0 1593.2
7 UAG F 999.6 999.7 F′ 981.6 N.D.
8 UUUCAUG G 2223.3 2223.6 G′ 2205.3 2205.6
9 UUG H 976.6 N.I. H′ 958.6 N.I.
10 AUUG I 1305.8 1306.0 I′ 1287.8 1287.9
11 AG J 693.5 N.I. J′ 675.5 N.I.
12 UUUUG K 1588.9 1589.1 K′ 1570.9 N.D.
13 AACUCG L 1939.2 1939.5 L′ 1921.2 1921.5
14 CAACAAG M 2291.4 2291.8 M′ 2273.4 2273.7
15 AAACUG N 1963.2 1963.5 N′ 1945.2 1945.5
16 CCUG B 1280.8 1280.9 B′ 1262.8 1262.9
17 UUACAUCAG O 2880.7 2881.1 O′ 2862.7 N.D.
18 UCG D 975.6 975.6 D′ 957.6 957.6
19 UUUUCG P 1894.1 1894.4 P′ 1876.1 1876.4

aThe entry numbers correspond to the numbered fragments shown in Figure 4B.

bN.I., not identified.

cN.D., not detected.