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. 2007 Jun 14;8:204. doi: 10.1186/1471-2105-8-204

Figure 1.

Figure 1

Genomorama can load and display the multiple annotated contigs stored in a whole genome shotgun GBK file. This screen shot shows five contigs from Sphingopyxis alaskensis RB2256 (extracted from the NCBI [21] file wgs.AAIP.1.gbff) and the associated sequence quality scores (from the NCBI [21] file wgs.AAIP.1.qscore). Quality scores are proportional to the negative log of the probability that a given base has been incorrectly assigned as an A, T, G or C and are shown as black plots superimposed over each contig track. The value of a quality score for each track is interactively displayed on the menu bar as a user specified score [i.e. "user(90)"] for the annotation track and base currently selected by the cursor.