Table 2.
List of SNPs Assayed
| SNP allele ID* | Genes | Position (Dec 2001) UCSC Human Genome Map) | 100 bp 5′ upstream sequence | Alleles | 100 bp 3′ upstream sequence | |
|---|---|---|---|---|---|---|
| 1 | 274579 | no | chr17:59600255-59600456 | ataatatatggtcctcggttggggaaagatacttatgatg | g/a | tagaagtacaactcaatagatggcattaaaacatattgta |
| aaggatattttttaatttaacttttttttaaatattggtaat | gtgtggatatatattttttcttttttaaaatgtgatattgac | |||||
| aggtcggcaacagcaact | gttttattaatattttt | |||||
| 2 | 884927 | no | chr17:66516874-66517074 | gtgattcttagccgaaaaaaaagcgtgtgctcttaaagta | g/a | atattcctttagctgctttgcatatttaacccagtcatcaa |
| tgttcagtttttctgtctacatatgctttgtgtgagttaaa | aaggcataatgacttcaatattttatatatcttggttttc | |||||
| aagggggtggtggtgta | aaggcataaatgacttcaatattttatatatcttggttttc | |||||
| aagtatcattcacattc | ||||||
| 3 | 104364 | RNAHP | chr17:66053470-66053671 | ccagaagccacaggattgaagggaaaggtgatcctg | g/a | acccaacaacgcttttaaagtgtcttctatttcattgtat |
| gtaactgttccaggattgctccaggttgagatggtattg | ttttttttaacttgccccaatgatagaaaagtcttttgctga | |||||
| ctaaattaaaattaaacaaga | aatgattttgatgatttt | |||||
| 4 | 92618 | KIAA0709 | chr17:64712464-64712665 | ccgggcgggggagggctctgcccctggaagagtcccct | g/a | ggttgccagagtcctgggggccccagaggagcaggag |
| gtggggaccaaaataagttccctaacatctcagctcct | tctgggagggcccagagttcaccctctagtggatccagg | |||||
| ggctctggtttggagcaaggggga | aggagcagcacccgagccctgga | |||||
| 5 | 559745 | SLC16A6 | chr17:69396069-69396270 | tgttttaagcttttttttttttgcttgtttttaaagccaaac | g/a | agatatgtagaaagctctttggttcacattccgatatta |
| aaaaacaaccaagcactcttccatatataaatctggct | aaatagtgacatgaactggcaaagtggttttaaagcttt | |||||
| gtattcagtagcaatacaa | cacgtgggataaatgatttt | |||||
| 6 | 641082 | no | chr17:60418570-60418771 | atgttgagttggtgactccagcctctttctcctggaggtc | g/a | catatgtataaccaaactccaagtgataaccagacccat |
| acaagatgatgattgcgtagatgttgcctggtgcaaagtg | ctctcctccaccttgacaaagcagattatagtatacaa | |||||
| ccccaaacagcaatagaaag | ggtaggaattcctgtcctattt | |||||
| 7 | 804731 | TOB1 | chr17:51903762-51903963 | ccaatggaatgttcccaggtgacagcccccttaacctca | g/a | tcttttgtagatggcttgaattttagcttaatacatgca |
| gtcctctccagtacagtaatgcctttgatgtgtttgcagc | gtattctaaccagcaattccagcctgttatggctaactaa | |||||
| ctatggaggcctcaatgagaa | aaaaagaaatgtatcgt | |||||
| 8 | 409259 | AKAP1 | chr17:59089735-59089936 | tgagagtcttttttgcactgttgaatgggcttggcact | c/a | tccatactgtagtcctattgagagacatttcgtctctga |
| caagtcaagatgaactcggaataacaaacatgtcct | ctccagaagtcctttcttt | |||||
| gaaaaaggatggactatgggttctcttcgcaaagcca | aaggatagtgtttaacaagcc | |||||
| 9 | 1565 | NAT2 | chr8:20634137-20642974 | gtcagttaatgtttccaagtccaattgttcctagagttct | g/a | aactaggctgaatgcaatcctcttgcttccagtctgta |
| tatagccaattctttcaaatatgcttcaatgtccatgat | ataaagtgctctcccttccaaactgtgcaagggaagtga | |||||
| ccctttggccagcaacag | tctca | |||||
| 10 | 419952 | MMD | chr17:57212307-57212508 | tgtagtccatgagttatatcctggctcagtggagtgatat | g/a | ttgctttgttgattaatctctcttgttggtgttttaataaat |
| ttatgtattatttttacttttctctcaggtcttatattaag | gaaataggcttgcctttagatcgggtgctgatattgcctg | |||||
| attaacatgttgttaata | tttcctagtaatgggctg | |||||
| 11 | 314335 | no | chr17:54535263-54535464 | tctttttgtctttaatgtttgcgcctctccgaatcagagaa | g/a | cttttgtgcatctaccgctatgtaaaggaagctgatgtca |
| gaagctgccaggattccagtacataccaaaacatgatga | gtagactggggggaacagtaaggcatgtttgtgaccgaa | |||||
| caataccctcaactgtgcaa | gctcaatttgccatcacagtg | |||||
| 12 | 572989 | MAP2K6 | chr17:70557575-70660250 | aaaggggaaatgtctcagtcgaaaggcaagaagcgaa | c/a | gagatttagactccaaggcttgcatttctattggaaatca |
| accctggccttaaattccaaagaagcatttgaacaac | gaactttgaggtgaaggcagatgacctggagcctataat | |||||
| ctcagaccagttccacaccacct | ggactgggacgaggtgcgta | |||||
| 13 | 498715 | no | chr17:67227231-67227432 | aaattataacaattttttctttgcagtaaacgatacctc | g/a | taaaataaccccaagccactctctagggtttttattttc |
| atctaagaggctctaatacctaaagagtttatccttaaaa | ttctttctttgtctttatcttttctaactagttttggaatta | |||||
| gtaaagtgactttgtacc | cgttagctactttggtt | |||||
| 14 | 827040 | GK001 | chr17:66126026-66126227 | aaaaggaatgatctatgaaatctgtgtaggttttaaatat | g/a | tgaaatttataggtagataaccagattgttgctttttgttt |
| tttaaaattataatacaaatcatcagtgcttttagtactt | aaaccagacagttgaaatggctataaagactgactctaa | |||||
| cagtgttaaagaaatcc | accaagattctgcaaataat |
Nomenclature according to reference. 1