Skip to main content
. 2007 Jun 8;7:37. doi: 10.1186/1472-6807-7-37

Table 3.

Barnase (BN) – Barstar (BS) interaction: thermodynamic and kinetic data and ZD scores from docking simulations with interfacial water molecules

BS BN log kda log ka ΔG° (kcal/mol) ΔΔG (kcal/mol) Nsol Best Rank ZDbest ZD-s ZDsc ZDel ZDdes
wtb wt -5.43 8.57 -19.00 - 50 1 65.5 55.6 41.6 12.0 2.0
wt H102A -0.89 8.60 -12.90 6.10 49 1 63.3 53.0 39.4 11.1 2.6
Y29A wt -3.00 8.46 -15.60 3.40 53 1 60.4 52.7 40.1 11.0 1.6
Y29A H102A -0.82 8.56 -12.70 6.30 50 1 59.5 50.7 38.1 10.6 2.0
Y29F wt -5.62 8.48 -19.10 -0.10 52 1 63.1 54.5 41.8 10.1 2.6
Y29F H102A -1.35 8.59 -13.50 5.50 48 1 61.7 51.3 38.6 10.6 2.2
D39A H102A 1.23 8.64 -10.10 8.90 50 1 60.4 48.6 37.8 6.8 4.0
wt K27A -2.35 7.71 -13.60 5.40 48 1 61.5 52.6 40.2 9.7 2.7
D39A K27A -0.17 7.76 -10.80 8.20 48 1 59.3 48.3 38.6 5.1 4.5
D35A wt -2.42 8.28 -14.50 4.50 50 1 58.2 51.4 38.9 9.7 2.8
E76A wt -4.68 8.30 -17.70 1.30 49 1 60.6 53.1 42.2 8.5 2.4

aDetails and legend concerning the quantities reported herein were explained in Table 1.

bExperimental data from [8] (Table 3) and [12] (Table 1)