Skip to main content
. 2007 May;144(1):43–53. doi: 10.1104/pp.106.094995

Table IV.

Library information and coexpression data for individual rice loci from orthologous groups shown in Table I with at least 50 matching cereal ESTs

Locus GT Family No. Libraries with Counts No. Libraries to Give 50% of Countsa UDP-GDH Correlationb UDP-GlcAdc Correlationc PF02458 Group Correlationd
Os02g04250 GT61 55 11 −0.30 −0.16 0.48**
Os10g35020 GT61 46 10 −0.20 −0.02 0.39**
Os02g22650 GT61 27 4 −0.07 −0.12 0.12
Os06g49320 GT61 34 8 −0.12 −0.05 0.34**
Os02g22480 GT61 41 11 0.04 0.11 0.26*
Os06g28124 GT61 25 4 −0.02 −0.13 −0.03
Os02g22380 GT61 38 9 0.07 0.11 0.24
Os06g27560 GT61 35 6 −0.22 −0.06 0.63**
Os02g22190 GT61 29 9 −0.19 −0.09 0.12
Os01g02940 GT61 33 6 −0.15 −0.12 −0.04
Os03g37010 GT61 55 9 0.26* 0.34* 0.27*
Os01g70200 GT47 55 14 0.63** 0.49** 0.14
Os01g70190 GT47 71 15 0.22 0.43** 0.01
Os02g32110 GT47 37 10 −0.15 −0.10 −0.10
Os04g32670 GT47 41 8 −0.22 −0.16 0.06
Os10g10080 GT47 OsGUT1 39 2 −0.12 −0.13 −0.07
Os05g35274 GT31 76 11 −0.04 −0.13 −0.10
Os09g25490 GT2 OsCESA9 32 3 −0.15 −0.12 0.07
Os10g32980 GT2 OsCESA7 29 2 −0.13 −0.11 0.03
Os03g56060 GT2 OsCslC9 34 7 0.08 0.00 −0.02
Os01g54620 GT2 OsCESA4 39 3 −0.09 −0.01 0.11
Os06g02180 GT2 OsCslD2 49 6 −0.15 −0.07 0.30*
Os07g36690 GT2 OsCslF2 10 2 −0.10 −0.08 0.07
Os08g06380 GT2 OsCslF6 53 13 0.33* 0.49** 0.31*
Os05g03174 GT43 29 7 0.07 −0.02 0.11
Os03g63270 GT77 38 8 −0.07 0.09 0.24
Os03g63280 GT77 22 5 0.03 −0.02 −0.06
Os01g48440 GT43 27 7 0.29* 0.43** 0.14
Os07g46380 GT61 27 6 −0.20 −0.14 0.41**
Os01g72610 GT61 32 8 −0.20 −0.24 0.41**
Os06g02260 GT48 35 12 0.24* 0.37** 0.23
Os03g02756 GT48 34 10 0.08 0.13 −0.07
Os06g47340 GT43 74 18 0.35** 0.33* 0.16
Os05g46260 GT64 34 8 −0.16 −0.04 0.16
a

The minimal number of libraries required to give 50% of the total counts for this locus. If a large proportion of the counts arise from a few libraries, this may indicate that this is not representative of generally high expression in cereals.

b,c,d

Correlation coefficients for normalized counts for each gene with normalized counts across 63 cereal libraries. Counts were normalized by dividing by total number of ESTs in each library to correct for variation due to library size. *, Significant at P < 0.05; **, significant at P < 0.01.

bCorrelations with sum of counts for three UDP-Glc dehydrogenase genes.

c

Correlations with sum of counts for three UDP-GlcAdc genes.

d

Correlations with sum of counts for genes in Pfam family PF02458 shown in Table III.