. 2007 Jul;144(3):1612–1631. doi: 10.1104/pp.107.096388

Table I.

List of proteins identified from leaves isolated from ‘Golden Promise’ seedlings

Proteins are ordered according to functional classification. A pie chart based on percentages represented by each functional group is presented in Figure 2B. Bold entries indicate protein also identified in root tissue.

TIGR Accession	No. of Peptides Defining Group	NCBInr	Annotation	Organism	E Value
Primary metabolism
TC130714	8	gi\|125580	Phosphoribulokinase	Wheat	0
TC131346	7	gi\|62732953	Fru-bisphosphate aldolase class I	Rice	0
TC131467	3	gi\|34911932	NADP-specific isocitrate dehydrogenase	Rice	0
TC131518	5	gi\|29367547	Adenosine kinase-like protein	Rice	0
TC131556	4	gi\|1143500	ADP-Glc pyrophosphorylase small subunit	Barley	0
TC132023	4	gi\|21741	Fru-bisphosphatase	Wheat	0
TC132350	4	gi\|2105137	ADP-Glc pyrophosphorylase large subunit	Barley	0
TC138581	6	gi\|33113259	Enolase	Rice	0
TC138582	9	gi\|763035	Glyceraldehyde-3-P dehydrogenase	Zea mays	0
TC138635	13	gi\|108705993	Glyceraldehyde-3-P dehydrogenase B	Rice	0
TC138641	15	gi\|31087909	Rubisco large subunit	Barley	0
TC138666	15	gi\|167097	Ribulose 1,5-bisphosphate carboxylase activase isoform 2	Barley	0
TC146737	6	gi\|167095	Ribulose 1,5-bisphosphate carboxylase activase	Barley	0
TC139062	11	gi\|50934283	Glycolate oxidase	Rice	0
TC139210	4	gi\|1212996	UDP-Glc pyrophosphorylase	Barley	0
TC139211	5	gi\|50904581	Hydroxypyruvate reductase	Rice	0
TC139220	3	gi\|77548686	Pyruvate kinase	Rice	0
TC139256	12	gi\|77554291	Rubisco subunit binding-protein α-subunit	Rice	0
TC146378	20	gi\|3293043	Phosphoglycerate kinase	Wheat	0
TC146528	3	gi\|56785335	Phosphoglycerate mutase	Rice	0
TC146663	12	gi\|28190676	Transketolase	Rice	0
TC146784	6	gi\|18076790	Phosphoglucomutase	Wheat	0
TC146896	9	gi\|14265	Sedoheptulose-1,7-bisphosphatase	Wheat	0
TC131363	1	gi\|18978	Glyceraldehyde 3-P dehydrogenase	Barley	0
TC131622	3	gi\|76363515	Fru-1,6-bisphosphatase	Saccharum sp.	1E-178
TC131870	1	gi\|50899346	Enoyl-acyl carrier protein reductase	Rice	2E-178
TC131364	11	gi\|729003	Carbonic anhydrase	Barley	3E-176
TC139061	8	gi\|50934283	Glycolate oxidase	Rice	1E-172
TC139042	5	gi\|21844	33-kD oxygen-evolving protein of PSII	Wheat	5E-170
TC146536	4	gi\|50910187	Glyceraldehyde-3-P dehydrogenase	Rice	4E-169
TC147698	4	gi\|54291349	PSII stability/assembly factor HCF136	Rice	9E-168
TC146289	5	gi\|34915204	Glyoxysomal malate dehydrogenase	Rice	2E-152
TC138805	8	gi\|609262	Triosephosphate isomerase	Secale cereale	7E-146
TC147935	3	gi\|51535181	Fructokinase	Rice	3E-143
TC146529	4	gi\|50932771	Malate dehydrogenase	Rice	9E-139
TC131409	3	gi\|2507469	Triosephosphate isomerase	Barley	1E-120
TC131384	3	gi\|15240250	Ribulose-P 3-epimerase	Arabidopsis	8E-119
TC131383	4	gi\|21837	23-kD oxygen evolving protein of PSII	Wheat	6E-118
TC140560	4	gi\|50934597	Rib-5-P isomerase	Rice	7E-115
TC132198	3	gi\|51090360	Fru-bisphosphate aldolase	Rice	2E-108
TC138580	7	gi\|11990897	Rubisco small subunit	Wheat	6E-98
TC132200	1	gi\|51090360	Fru-bisphosphate aldolase	Rice	1E-77
TC134951	1	gi\|56784876	Phosphoribulokinase/uridine kinase-like	Rice	4E-76
TC134990	1	gi\|18978	Glyceraldehyde 3-P dehydrogenase	Barley	1E-56
TC147083	1	gi\|37651973	Blue copper-binding protein	Barley	1E-54
TC146310	1	gi\|431920	Plastocyanin	Barley	9E-51
TC139192	1	gi\|431920	Plastocyanin	Barley	3E-50
Secondary metabolism
TC130720	3	gi\|68655441	AdoMet synthase 2	Barley	0
TC130859	4	gi\|34915052	Ferredoxin-nitrite reductase	Rice	0
TC131827	3	gi\|50082771	Hydroxymethylbutenyl 4-diphosphate synthase	Z. mays	0
TC139066	4	gi\|417745	Adenosylhomocysteinase	Wheat	0
TC139106	4	gi\|52353541	Ketol-acid reductoisomerase	Rice	0
TC139229	3	gi\|1705612	Catalase isozyme 1	Barley	0
TC146718	4	gi\|2493543	Catalase 1	Wheat	0
TC139584	3	gi\|52077207	Monodehydroascorbate reductase	Rice	0
TC139836	4	gi\|34894800	Dihydrolipoamide dehydrogenase	Rice	0
TC146253	7	gi\|50947367	Putative aminotransferase	Rice	0
TC131070	3	gi\|34911282	Guanine nucleotide-binding protein β-subunit-like protein	Rice	3E-170
TC138583	3	gi\|32352138	Thiamine biosynthetic enzyme	Rice	7E-167
TC132431	1	gi\|19849543	Porphobilinogen deaminase	Wheat	8E-166
TC139562	1	gi\|55233175	β-Cyano-Ala synthase	Rice	3E-159
TC133238	3	gi\|7619802	Putative glyoxalase I	Wheat	6E-158
TC131549	2	gi\|3688398	Ascorbate peroxidase	Barley	1E-141
TC139685	3	gi\|50909553	γ Hydroxybutyrate dehydrogenase	Rice	2E-141
TC132418	6	gi\|52076371	Oxidoreductase like	Rice	1E-138
TC132249	7	gi\|50945155	Oxidoreductase, Zn binding	Rice	3E-132
TC146831	8	gi\|15808779	Ascorbate peroxidase	Barley	8E-128
TC146265	4	gi\|28059599	Thylakoid lumenal 17.4-kD protein	Arabidopsis	4E-52
Amino acid metabolism
TC130708	7	gi\|2565305	Gly decarboxylase P subunit	Triticeae	0
TC131380	6	gi\|68655495	METS1 enzyme	Barley	0
TC131397	9	gi\|50918513	Gly hydroxymethyltransferase	Rice	0
TC131957	5	gi\|1707878\|	Aminomethyltransferase	Solanum tuberosum	0
TC139279	10	gi\|50510140	Ferredoxin-dependent Glu synthase	Rice	0
TC139283	4	gi\|71362640	Plastid Gln synthetase isoform GS2c	Wheat	0
TC139989	4	gi\|37703720	Aminotransferase AGD2	Rice	0
TC140047	3	gi\|633095	Plastidic Asp aminotransferase	Panicum miliaceum	0
TC146244	11	gi\|50510015	Ala aminotransferase	Rice	0
TC147191	5	gi\|50915564	Leu aminopeptidase	Rice	0
TC147233	7	gi\|1170029	Glu-1-semialdehyde 2,1-aminomutase	Barley	0
TC146634	4	gi\|585032	Cys synthase	Wheat	2E-165
TC132821	5	gi\|57899533	Putative plastidic Cys synthase 1	Rice	7E-126
Carbohydrate metabolism
TC132929	1	gi\|18025340	α-l-Arabinofuranosidase/β-d-xylosidase isoenzyme ARA-I	Barley	0
TC130915	1	gi\|3037080	Glucan endo-1,3-β-glucosidase isoenzyme I	Barley	2E-160
Energy
TC130729	4	gi\|525291	ATP synthase β-subunit	Wheat	0
TC148629	1	gi\|11583	ATPase, β-subunit	Barley	5E-60
Cytoskeleton
TC131417	3	gi\|108864035	Actin-7	Rice	0
TC146790	3	gi\|1709779	Profilin-1	Barley	2E-61
Oxidative balance
TC131399	1	gi\|20302473	Ferredoxin-NADP(H) oxidoreductase	Wheat	0
TC131398	3	gi\|20302471	Ferredoxin-NADP(H) oxidoreductase	Wheat	1E-167
TC130797	6	gi\|34901636	Thioredoxin-like protein CDSP32	Rice	8E-111
TC130826	4	gi\|3328221	Thioredoxin peroxidase	S. cereale	2E-109
TC131780	1	gi\|6179600	GPX12Hv, glutathione peroxidase-like protein	Barley	2E-97
TC146933	4	gi\|4138592	Thioredoxin M	Wheat	6E-93
TC132207	3	gi\|55833012	Peroxiredoxin Q	Wheat	4E-90
TC133526	1	gi\|51535721	Thioredoxin peroxidase 1	Rice	1E-79
TC131676	4	gi\|1572627	Copper/Zn superoxide dismutase	Wheat	2E-78
TC146752	3	gi\|108708142	Superoxide dismutase 1	Rice	4E-74
Defense
TC138584	4	gi\|50909007	Putative elongation factor 2	Rice	0
TC146252	7	gi\|2119927	Translation elongation factor EF-G	Glycine max	0
TC146566	3	gi\|949878	Elongation factor 1-α	Barley	0
TC146710	3	gi\|50906401	Elongation factor 1-γ	Rice	1E-178
TC133131	1	gi\|3550485	cp33Hv	Barley	1E-149
TC140393	5	gi\|56682582	Thaumatin-like protein TLP5	Barley	3E-130
TC147110	3	gi\|77556660	Elongation factor TS family protein	Rice	1E-126
TC139502	5	gi\|3550483	cp31BHv	Barley	4E-126
TC148742	4	gi\|77556660	Elongation factor TS family protein	Rice	6E-48
Translation
TC131505	5	gi\|14017610	Ribosomal protein S3	Wheat	6E-132
TC147671	1	gi\|50905143	Putative 50S ribosomal protein L3	Rice	4E-111
TC131976	3	gi\|50917085	Ribosomal protein	Rice	3E-98
TC131434	4	gi\|968902	Ribosomal protein S8	Rice	1E-84
Protein folding				Rice
TC131557	9	gi\|77554415	70-kD heat shock-related protein	Rice	0
TC131558	9	gi\|92870233	Heat shock protein Hsp70	*Medicago truncatula*	0
TC138914	5	gi\|77552703	Heat shock cognate 70-kD protein	Rice	0
TC138915	4	gi\|108707463	Heat shock cognate 70-kD protein	Rice	0
TC139132	8	gi\|34897924	Chaperonin 60 β	Rice	0
TC139483	3	gi\|556673	Heat shock protein	S. cereale	0
TC139572	3	gi\|110289207	Chaperonin CPN60-1	Rice	0
TC132470	1	gi\|50945195	Peptidyl-prolyl cis-trans isomerase	Rice	0
TC146697	1	gi\|34897236	60S ribosomal protein L1	Rice	3E-174
TC146605	3	gi\|13925734	Cyclophilin A-2	Wheat	1E-88
TC138916	1	gi\|59799993	Heat shock protein 70	Z. mays	7E-85
TC135924	1	gi\|50948109	Immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase	Rice	1E-51
Protein degradation
TC131728	6	gi\|399213	ATP-dependent protease ATP-binding subunit	Lycopersicon esculentum	0
TC141753	1	gi\|22331173	ATPREP1/ATZNMP; metalloendopeptidase	Arabidopsis	1E-139
TC146981	1	gi\|11967891	20S proteasome α-subunit	Z. mays	7E-130
TC139286	3	gi\|1323748	Thiol protease	Wheat	1E-86
Signaling
TC146758	8	gi\|108862567	RNA-binding protein	Rice	0
TC147198	12	gi\|50910077	Translational elongation factor Tu	Rice	0
TC133717	11	gi\|50935225	Putative mRNA-binding protein precursor	Rice	1E-139
TC132022	1	gi\|34913270	29-kD ribonucleoprotein A	Rice	5E-88
TC138855	1	\|dbj\|BAA02436.1\|	Elongation factor 1 β	Wheat	7E-70
Unknown
TC139280	7	gi\|2072727	Fd-GOGAT protein	Rice	0
TC139914	1	gi\|15235282	Amino acid-binding/oxidoreductase	Arabidopsis	0
TC146506	3	gi\|50925621	OSJNBa0084K20.14	Rice	3E-114
TC141769	1	gi\|54290425	Unknown protein	Rice	2E-101
TC131703	3	gi\|18394414	Unknown protein	Arabidopsis	1E-79
TC150479	1	gi\|50947401	Unknown protein	Rice	2E-72
TC148625	5	gi\|50928389	OSJNBa0086O06.22	Rice	3E-60
TC139271	1	gi\|19087	Unnamed protein product	Barley	9E-43