Table II.
Transposon elements induced by OsSRT1 RNAi
| Transposon Class | Family | Locus | Affymetrix Probe Sets | Log2 |
|---|---|---|---|---|
| Class I (retrotransposons) | Ty3-gypsy subclass retrotransposon family | Os03g19600 | Os.8570.3.S1_s_at | 4 |
| Os03g50670 | Os.48948.1.S1_x_at | 5.6 | ||
| Os02g32880 | Os.46692.1.S1_at | 5.4 | ||
| Os09g31930 | Os.52004.1.S1_at | 2.8 | ||
| Os03g50670 | Os.48948.1.S1_x_at | 5.6 | ||
| Os04g07770 | Os.41695.3.S1_x_at | 1.9 | ||
| Os10g08340 | OsAffx.8464.1.S1_at | 3.6 | ||
| Ty1-copia subclass retrotransposon family | Os08g03880 | Os.23300.1.S1_at | 4 | |
| Non-LTR retrotransposon family (LINE) | Os12g41440 | Os.20851.1.A1_x_at | 2.9 | |
| Os05g26730 | Os.20851.1.A1_x_at | 2.9 | ||
| Unclassified | Os04g48650 | Os.20851.1.A1_x_at | 2.9 | |
| Os05g26740 | Os.20851.1.A1_x_at | 2.9 | ||
| Os08g22520 | Os.20851.1.A1_x_at | 2.9 | ||
| Os03g33160 | Os.20851.1.A1_x_at | 2.9 | ||
| Os07g09760 | OsAffx.8923.1.S1_at | 2.5 | ||
| Os05g30290 | OsAffx.8923.1.S1_at | 2.5 | ||
| Os04g51870 | OsAffx.8923.1.S1_at | 2.5 | ||
| Os03g59190 | OsAffx.8923.1.S1_at | 2.5 | ||
| Os11g36110 | OsAffx.8923.1.S1_at | 2.5 | ||
| Os11g29950 | OsAffx.8923.1.S1_at | 2.5 | ||
| Os07g05440 | Os.50940.1.S1_a_at | 5.3 | ||
| Os08g10250 | Os.52458.1.S2_at | 1.6 | ||
| Os03g18880 | Os.53278.1.S1_at | 4.5 | ||
| Os02g14210 | OsAffx.24244.1.S1_at | 3.9 | ||
| Os08g35020 | Os.50495.1.S1_at | 5.5 | ||
| Os07g44720 | Os.51357.1.S1_at | 1.4 | ||
| Os07g31690 | Os.51357.1.S1_at | 1.4 | ||
| Os07g23980 | Os.26542.1.A1_at | 1.7 | ||
| Os07g20260 | Os.26542.1.A1_at | 1.7 | ||
| Class II (DNA transposons) | hAT-like transposase family | Os03g36550 | Os.23305.1.A1_at | 6 |
| Os06g11830 | Os.20614.3.S1_x_at | 9 | ||
| Os07g15340 | Os.20614.3.S1_x_at | 9 | ||
| Os11g40360 | OsAffx.424.1.S1_at | 8.4 | ||
| Os07g47800 | OsAffx.424.1.S1_at | 8.4 | ||
| Os10g02910 | OsAffx.424.1.S1_at | 8.4 | ||
| Pong subclass transposase family | Os10g31120 | OsAffx.8070.1.S1_x_at | 5.3 | |
| Os10g41350 | OsAffx.8070.1.S1_x_at | 5.3 | ||
| Os01g60590 | OsAffx.8070.1.S1_x_at | 5.3 | ||
| Os01g65240 | Os.31886.1.S1_at | 2.8 | ||
| Os01g60580 | OsAffx.21778.2.S1_at | 5.9 | ||
| Os01g27580 | OsAffx.8898.1.S1_at | 2.1 | ||
| Os12g12500 | OsAffx.8898.1.S1_at | 2.1 | ||
| Os05g43630 | OsAffx.8898.1.S1_at | 2.1 | ||
| CACTA, En/Spm subclass transposase family | Os01g60530 | Os.8248.2.S1_x_at | 7 | |
| Os10g30670 | Os.47371.1.S1_at | 5.4 | ||
| Os10g26910 | Os.48948.1.S1_x_at | 4.1 | ||
| Os10g21980 | Os.46692.1.S1_at | 7.6 | ||
| Os04g29620 | Os.46692.1.S1_at | 7.6 | ||
| Os11g22240 | Os.46692.1.S1_at | 7.6 | ||
| Os07g24940 | Os.6645.1.S1_s_at | 3.4 | ||
| Os07g24960 | Os.6645.1.S1_s_at | 3.4 | ||
| Os08g34390 | Os.56875.1.S1_at | 4.4 | ||
| Os07g32710 | OsAffx.22999.1.S1_at | 3.1 | ||
| Os10g26910 | OsAffx.26155.1.S1_x_at | 3.7 | ||
| Mutator subclass transposase family | Os08g34770 | Os.38884.2.S1_x_at | 4.6 | |
| Os03g28930 | Os.38884.2.S1_x_at | 4.6 | ||
| Os12g35100 | Os.38884.2.S1_x_at | 4.6 | ||
| Os09g03180 | Os.41695.3.S1_x_at | 1.9 | ||
| Os02g03240 | Os.41695.3.S1_x_at | 1.9 | ||
| Os05g07920 | Os.41695.3.S1_x_at | 1.9 | ||
| Os04g23470 | Os.41695.3.S1_x_at | 1.9 | ||
| Os10g26360 | Os.41695.3.S1_x_at | 1.9 | ||
| Os03g18060 | Os.41695.3.S1_x_at | 1.9 | ||
| Os03g47130 | Os.41695.3.S1_x_at | 1.9 | ||
| Os07g46020 | Os.41695.3.S1_x_at | 1.9 | ||
| Os04g12520 | Os.41695.3.S1_x_at | 1.9 | ||
| Os05g25470 | Os.41695.3.S1_x_at | 1.9 | ||
| Os06g29050 | Os.41695.3.S1_x_at | 1.9 | ||
| Os05g36060 | Os.41695.3.S1_x_at | 1.9 | ||
| Os08g28990 | Os.41695.3.S1_x_at | 1.9 | ||
| Os06g08070 | Os.41695.3.S1_x_at | 1.9 | ||
| Os01g18470 | Os.41695.3.S1_x_at | 1.9 | ||
| Os12g29530 | Os.41695.3.S1_x_at | 1.9 | ||
| Os01g28740 | Os.41695.3.S1_x_at | 1.9 | ||
| Os07g41430 | Os.41695.3.S1_x_at | 1.9 | ||
| MuDR transposase family | Os03g46080 | Os.41695.3.S1_x_at | 1.9 | |
| Os05g05090 | Os.41695.3.S1_x_at | 1.9 | ||
| Os11g31830 | Os.41695.3.S1_x_at | 1.9 | ||
| Os08g19970 | Os.41695.3.S1_x_at | 1.9 | ||
| Os12g08080 | Os.41695.3.S1_x_at | 1.9 | ||
| Unclassified | Os10g42160 | Os.48027.1.S1_x_at | 3 | |
| Os09g31940 | Os.52004.1.S1_at | 3.3 | ||
| Os12g32140 | OsAffx.14528.2.S1_x_at | 2.2 | ||
| Os05g03800 | OsAffx.14528.2.S1_x_at | 2.2 | ||
| Os06g47420 | Os.5212.2.S1_at | 1.9 | ||
| Os02g43370 | OsAffx.2947.1.S1_at | 1.6 | ||
| Os12g42190 | Os.19899.2.S1_at | 1.6 |