Table 2.
Similarity indices based on designations of presence or absence (stated in brackets) from hybridization signals of genomic DNA fragments from different Pseudomonas members on P. putida KT2440-based microarraysa
| Strain | Present (absent) in percent (%) | ||
|---|---|---|---|
| Putative genes and intergenic regions (7,781 probe sets) | Putative genes (5,338 probe sets) | Putative genes with assigned function (3,670 probe sets) | |
| P. putida DSM 6125b | 97.6 (1.4) | 99.6 (0.0) | 99.8 (0.0) |
| P. putida DSM 3931 | 98.6 (1.4) | 99.9 (0.1) | 100.0 (0.0) |
| P. putida S12b | 78.0 (16.9) | 81.8 (13.9) | 86.9 (9.7) |
| P. putida DSM 291T | 60.5 (39.5) | 64.2 (35.8) | 69.3 (30.7) |
| P. putida DSM 50198 | 56.2 (43.8) | 60.7 (39.3) | 66.5 (33.5) |
| P. putida DSM 50208 | 58.8 (41.2) | 62.6 (37.4) | 67.8 (32.2) |
| P. monteilii DSM 14164 | 57.7 (42.3) | 61.7 (38.3) | 66.8 (33.2) |
| P. fluorescens DSM 50090T | 22.0 (78.0) | 27.2 (72.8) | 30.7 (69.3) |
aPresent/absent designations (present: p < 0.05; absent: p ≥ 0.05; τ = 0.015) derived from a decision matrix in Affymetrix MAS 5.0
bReplicate assays were performed for P. putida DSM 6125 and S12 and the values listed include only genes that were designated present or absent in both replicates.