. 2007 Mar 17;75(5):1133–1142. doi: 10.1007/s00253-007-0914-z

Table 4.

Comparison of the presence/absence designations of genes encoding metabolic pathways of aromatic compounds in different pseudomonads derived from Affymetrix decision matrix MAS 5.0

Strain	Present (%)^a	Genes of aromatic pathways not identified in hybridizations with genomic DNA
P. putida DSM 6125	100.0
P. putida DSM 3931	100.0
P. putida S12	100.0
P. putida DSM 291^T	82.9	catC; fadAxB2x; fcs; pcaQ; phaDHMN; vdh; calB; catA2
P. putida DSM 50198	75.7	benE-1; catCR; ech; fadAxB2x; fcs; pcaDQ; phaGHMN; pobAR; vdh; catA2
P. putida DSM 50208	75.7	catCR; ech; fadAxB2x; pcaBCQ; phaDHJMN; phhR; pobR; vdh; calB; catA2
P. monteilii DSM 14164	74.3	benE-1; catCR; ech; fadB2x; fcs; pcaBDQ; phaEGHMN; pobAR; vdh; calB; catA2
P. fluorescens DSM 50090^T	25.7	aat; acdA; benACDE-1E-2FKR; catABCR; fadAxBB1xB2xDx; fcs; hpd; pcaCDHIJKQT; pcm; phaAB-EG-ILMN; phhBR; pobAR; tyrB-2; vanAB; vdh; calB; ferR; catA2

^aSelected 70 genes (100%) involved in catabolism of aromatic compounds annotated in P. putida DSM 6125: protocatechuate (pcaBCDFGHIJKQRT), catechol branches β-ketoadipate pathway (catABCRA2), homogentisate pathway (hmgA, mai), central meta-cleavage (pcm), p-hydroxybenzoate (pobAR), benzoate (benABCDE-1E-2FKR), phenylacetate pathway (phaABCDEFGHIJKLMNJ1), n-phenylalkanoic acids (fadABDHAxB1xB2xD2Dx), phenylpropenoid compounds (vanAB, vdh, calB, ferR, fcs, ech, aat, acdA), and phenylalanine/tyrosine (phhABR, tyrB-1B-2, hpd, pcm).