TABLE 1.
Model parameters
Parameters | Values | |
---|---|---|
Φ | Cell length | 10 μm |
ΔL | Gradient | 0.02L* |
Rtotal | Total receptor | 80,000 molecules/cell† |
KR | Ligand affinity | 0.18 μM† |
koff | Dissociation rate | 1 s−1† |
kon | Association rate | 5.6 s−1μM−1† |
Xtotal | Total second messenger | 200,000 molecules/cell‡ |
EC50 | § | 0.01μM§ |
KX | § | 4210 molecules/cell§ |
kd | X degradation rate | 1.0 s−1‡ |
kp | X production rate | 1/4210 s−1(molecules/cell)−1¶ |
X represents G-protein, because the second reaction is G-protein activation in Dictyostelium cells.
The gradient is expressed as the concentration difference between the anterior and posterior ends of a cell. For calculation of the SNR, the concentration difference at the center of anterior and posterior regions was used, and the difference, ΔL, is 0.01L (13,14).
Receptor number, ligand affinity, and dissociation rate were obtained experimentally (Fig. 1) (16,17,19). Association rate was obtained from KR and koff.
The values were inferred.
EC50 and KX are the concentration of cAMP and active receptor where the activation of the second messenger reaches half-maximum, respectively (36). KX was obtained from EC50, KR, and Rtotal, according to Eq. 8.
kp was determined by kp = kd/Kx.