Table 1.
One sample | 16 samples (e.g. Cepheid QRT-PCR machine) | 96 samples (96-well QRT-PCR machine) | 384 samples (ABI QRT-PCR machine) | 3,072 samples (OpenArray™) | Detects low-level mutations (1–10% mutant-to-wild type) | Nucleotide change and/or position of the mutation | |
---|---|---|---|---|---|---|---|
dHPLC/Surveyorb | 0.5 h | 3-4 h | 24 h | 96 h | 768 h | Yes | No |
s-RT-MELTc | 1.5 h | 2.0 h | 3.0 h | 4.0 h | 17 h | Yes | Yes |
aPost-PCR treatment time to accomplish pre-screening for unknown mutations.
bSurveyor™ treatment requires ∼15–20 minutes. The dHPLC screens one sample at a time (12-15 minutes/sample including wash).
cAn additional half hour for every batch of 96 samples purified via 96-sample Qiagen purification kit, following Surveyor™ treatment, was accounted for s-RT-MELT.