Table 2.

Evaluation of best motifs. Best motifs predicted by Matlign and the individual motif prediction tools. Rank and Hits indicate the rank of the motif in the original analysis and the number of motif instances with raw score higher than or equal to 6, respectively. The significance of the motifs was determined using Clover [26].

Program	Rank	Consensus	Hits	Raw score	P-value
Matlign, node_nro119	-	AYTCCGCGGARM	19	40.8	<0.0001
MotifSampler	44	TCCGyGGA	24	31.9	<0.0001
oligo-analysis	2	CCGCGGAA	9	29.6	<0.0001
POCO	37	TCCGNGGA	24	27.1	<0.0001