Table 5.
In silico promoter analysis of genes differentially expressed in Nfia-/- mice
| Affymetrix probe set ID | Fold change at P16 | P value | Gene symbol | Number of motifs |
| 100068_at | -3.14 | 0.01 | Aldh1a1 | 3 |
| 92642_at | -1.35 | 0.01 | Car2 | 1 |
| 103046_at | -1.50 | 0.01 | Car4 | 1 |
| 104383_at | 1.43 | 0.00 | Crmp1 | 3 |
| 102307_at | 1.87 | 0.01 | Dcx | 4 |
| 103438_at | -1.43 | 0.01 | Dio2 | 1 |
| 98967_at | 2.59 | 0.00 | Fabp7 | 1 |
| 100494_at | -1.87 | 0.00 | Fgf1 | 1 |
| 92940_s_at | -2.94 | 0.00 | Gabra6 | 1 |
| 92939_at | -3.22 | 0.00 | Gabra6 | 1 |
| 94143_at | -1.56 | 0.03 | Gfap | 3 |
| 94144_g_at | -1.71 | 0.01 | Gfap | 3 |
| 102020_at | -1.22 | 0.04 | Kcnk3 | 2 |
| 102405_at | -1.52 | 0.01 | Mag | 1 |
| 96865_at | 1.32 | 0.00 | Marcks | 1 |
| 160458_at | -1.33 | 0.01 | Mcam | 2 |
| 100153_at | 1.29 | 0.02 | Ncam | 1 |
| 97520_s_at | 1.66 | 0.02 | Nnat | 1 |
| 93081_at | 1.20 | 0.03 | Rbbp7 | 2 |
| 94056_at | -1.68 | 0.01 | Scd1 | 3 |
| 94057_g_at | -1.70 | 0.02 | Scd1 | 3 |
| 93669_f_at | 2.22 | 0.00 | Sox11 | 2 |
| 101631_at | 1.88 | 0.02 | Sox11 | 2 |
| 101993_at | 1.47 | 0.02 | Tnc | 1 |
Selected genes dysregulated in Nfia-/- mice containing one or more conserved NFI recognition motifs within 2 kilobases upstream of their transcription start site. A complete list of all NFI motif carrying genes identified in our analysis is given in Additional data file 2. Note that some genes, such as Gabra6 and Gfap, were represented by more than one probe set on the microarray. P16, postnatal day 16.